Publications from Maine INBRE-supported Research

How to Acknowledge INBRE Support

2026

Lemeshova A, Patel KA, Bloom AJ, Golan L, Haidari H, Limbada A, Zhao C, Honeycutt JA. A systematic review of ketamine’s anxiolytic potential in rodent behavioral models of anxiety and PTSD. Review. Pharmacol Biochem Behav. 2026 Feb;259:174144. Epub 2025 Dec 12. PMID:41391550.

Menard R, Morin E, Morse D, Halluin C, Pende M, Baanannou A, Grendler J, Fuqua H, Li J, Lancelot L, Drent J, Bonnet F, Graber JH, Murawala P, Dray C, Pradère JP, Coffman JA, Madelaine R. Zebrafish genetic model of neuromuscular degeneration associated with Atrogin-1 expression. PLoS Genet. 2026 Jan 9;22(1):e1012019. doi: 10.1371/journal.pgen.1012019. PMID:41511973. PMC12810921.

Soleimani E, Chowdhury A, Zhu JS, Ospanow E, Moulton KD, Dube DH, Jakeman DL. Inhibition of glycoprotein biosynthesis in the pathogenic bacterium Helicobacter pylori by masked carbohydrate phosphonates. Chem Commun (Camb). 2026 Jan 8;62(2):576-579. doi: 10.1039/d5cc05452d. PMID:41351553. PMC12681240.

Timmerman B; Honeycutt Jennifer; Skully Jordan; Patel Deep; Khan Waris; Neagu Alan; Baez Eshani; Battagliese Quinn, Brummelte Susanne. Investigating Cannabidiol’s Effectiveness to Mitigate the Adverse Consequences of Exposure to Neonatal Procedural Pain. Dev Psychobiol. 2026 Mar;68(2):e70125. doi: 10.1002/dev.70125. PMID:41619201.

Ung, Panhasith; Ankita Paul; Soumyakanta Maji; Pilar Saavedra-Weis; Karen D Moulton; Suvarn S Kulkarni; Danielle H Dube. Assessing -Naphthylmethyl and -Anthracenemethyl Glycosides as Metabolic Inhibitors of Bacterial Glycan Biosynthesis. ACS Infect Dis. 2026 Feb 13;12(2):544-554.  doi: 10.1021/acsinfecdis.5c00559. Epub 2025 Sep 22. PMID: 40980976. PMC12910604.

2025

Altair T; E Dragoti; V Sojo; Y Li; S Skiffington; W A Sullivan; G T Drozd; S E McGlynn; D Galante; H Varela; R Hudson. Carbon Reduction Powered by Natural Electrochemical Gradients under Submarine Hydrothermal Vent Conditions. Journal of the American Chemical Society. 8/13/2025. PMID: 40730338. PMC12356197 (available on 2026-07-29).

Bhargava, Divya; Aniqa Chowdhury; Danielle H Dube. Chemical tools to study and modulate glycan-mediated host-bacteria interactions. Review. Curr Opin Chem Biol. 2025 Aug:87:102603. doi: 10.1016/j.cbpa.2025.102603. Epub 2025 Jun 4. PMID: 40472591.

Garretson, Alexis C, Alexandra Duffy, Richard Hilliard, Ashley Taylor, Caitlin Oliver-Olsen, Morgan Karns, and Jane Disney. Public Health Concerns at the Intersection of Drinking Water Contamination and Low Healthcare Access in Maine. Maine Policy Review 34.2 (2025): 85 -98, https://digitalcommons.library.umaine.edu/mpr/vol34/iss2/9/.

Nigrovic SE, Paul A, Maji S, Ghosh A, Tran J, Luong P, Rackear WJ, Stemmler EA, Moulton KD, Kulkarni SS, Dube DH. Examination of Acetylated Monosaccharides as Metabolic Probes in Bacteria. ACS Infect Dis. 2025 Nov 14;11(11):3355-3363. doi: 10.1021/acsinfecdis.5c00765. Epub 2025 Oct 13. PMID: 41082400. PMC12624832.

Paulmann, Anastasia; Matthew D Cox; Tom Boewer; Hannah M Somers; Heath Fuqua; Ryan P Seaman; Joel H Graber; Anchal Mahajan; Cory P Johnson; Laura L Beverly-Staggs; Sonia Sandhi; Heiko Schenk; Hermann Haller. Sodium-glucose co-transporter 2 inhibition improves age-dependent kidney microvascular rarefaction. Kidney Int. 2025 Dec 23:S0085-2538(25)01020-8. Online ahead of print. PMID:41448458.

Navdeep Gogna; Jai Pinkney; Lisa Stone; Mustafa Khorzom; Fuxin Zhao; Gayle B Collin; Juergen K Naggert; Mark P Krebs; Patsy M Nishina. A biometric survey of known and prospective murine models of posterior microphthalmia-nanophthalmia. Exp Eye Res. 2025 Jun:255:110335. doi: 10.1016/j.exer.2025.110335. Epub 2025 Mar 26. PMID: 40154727. PMC12906678.

A polycistronic locus encodes both a tumor-suppressive microRNA and a long non-coding RNA regulating testis morphology in Drosophila. Carney TD, Shcherbata HR. bioRxiv [Preprint]. 2025 May 16:2024.10.10.617551. doi:10.1101/2024.10.10.617551. PMID:39416153. PMC11482908.

Integration of a neuronal RNAseq dataset with the draft transcriptome refines gene predictions and highlights potential systematic response to injury. Felicia F Wang; Harrison P Fisher; Lisa M Ledwidge; Joel H Graber; Riley A Grindle; Jarod A Rollins; Hadley W Horch. bioRxiv: the preprint server for biology. 07/18/2025. 10.1101/2025.07.13.663756. PMID:40791512. PMC12338758.

Modified tau leads to neuronal and global ribosome dysfunction in C. elegans model of tauopathy. Ata A, Somers HM, Lind N, Fuqua JH, Rollins JA. bioRxiv [Preprint]. 2025 Aug 30:2025.08.29.670302. doi:10.1101/2025.08.29.670302. PMID:40909550. PMC12407964.

Paclitaxel neurotoxicity is triggered by epidermal EG5-dependent microtubule fasciculation and X-ROS formation. Hsieh CJ, Cirrincione AM, Vlach MR, Diaz AC, Schmidt NA, Li X,Gutierrez S,Ugo MJ, Amaya Sanchez MC, Reimonn CA, Wuchty S, Pellegrini AD, Rude LR, Pappalardo LG, Regan DP, Zhao B, Zhang F, Howell C, Hrstka S, Dasari S, Capobianco E, Lisse TS, Harrison BJ, Staff NP, Xu MX, Rieger S. Res Sq [Preprint]. 2025 Aug 20:rs.3.rs-5470731. doi:10.21203/rs.3.rs-5470731/v1. PMID:40894047. PMC12393485.

SGLT2 Inhibition Ameliorates Age-Dependent Renovascular Rarefaction. Anastasia Paulmann; Matthew D Cox; Tom Boewer; Hannah M Somers; Jeremy Fuqua; Ryan P Seaman; Joel H Graber; Anchal Mahajan; Cory P Johnson; Laura L Beverly-Staggs; Sonia Sandhi; Heiko Schenk; Hermann Haller. bioRxiv : the preprint server for biology. 11/30/2025. 10.1101/2025.06.27.654312. PMID: 40667048. PMC12262580.

T-regulatory cell protection of progenitor cells from CD4 (+) T-cell-mediated cytotoxicity is essential for endogenous mouse digit-tip regeneration. Beal Z, Reeve RE, Hammond E, Rosenthal N, Godwin J. T-regulatory cell protection of progenitor cells from CD4 (+) T-cell-mediated cytotoxicity is essential for endogenous mouse digit-tip regeneration. bioRxiv: the preprint server for biology. DOI: 10.1101/2025.11.19.689270. 2025 November 19. PMC12667969.

The essential role of connective-tissue cells during axolotl limb regeneration. Damián García-García, Dunja Knapp, Minjoo Kim, Katelyn Jamwal, Heath Fuqua, Ryan P Seaman, Riley E Grindle, Sergej Nowoshilow, Maria Novatchkova, Fred W Kolling, Joel H Graber, Prayag Murawala. bioRxiv [Preprint]. 2025 Apr 2:2025.03.30.645595. [Version 1] doi: 10.1101/2025.03.30.645595. PMID:40236065. PMC11996436.

Transport Dynamics Across Prebiotic Hydrothermal Mineral Barriers: Comparison with Contemporary Proton Motive Pathways. Thiago Altair; Douglas Galante; Hamilton Varela; Yannick de Decker; Reuben Hudson. ChemRxiv, preprint. 04/18/2025. https://chemrxiv.org/doi/10.26434/chemrxiv-2025-jrc2j.

Becker Y, Haller H. Current understanding of heparanase 2 regulation, a non-heparanase. Biochem Soc Trans. 2025 Feb 5;53(1):BST20241281. doi: 10.1042/BST20241281. PMID: 39910799. PMCID: PMC12184952.

Bolanos-Palmieri P, Schenk H, Bähre H, Schroder P, Staggs L, Haller H, Schiffer M. Kynurenine Pathway Dysregulation Impairs Podocyte Morphology and Bioenergetics In Vitro and Leads to Glomerular Dysfunction. FASEB J. 2025 Nov 30;39(22):e71228. doi: 10.1096/fj.202502175R. PMID: 41222982. PMC12611232.

Boi R, Lassén E, Johansson A, Liu P, Chaudhari A, Tati R, Müller-Deile J, Schiffer M, Ebefors K, Nyström J. Cytoskeleton-associated protein 4 affects podocyte cytoskeleton dynamics in diabetic kidney disease. JCI Insight. 2025 Jun 10;10(14):e181298. doi:0.1172/jci.insight.181298. PMID:40493405. PMC2288980.

Kraus L, Fricker G. Effect of Cu(ATSM) on the expression and activity of ABC export proteins in killifish (Fundulus heteroclitus) kidney tubules. Environ Toxicol Pharmacol. 2025 Jun;116:104696. doi: 10.1016/j.etap.2025.104696. Epub 2025 Apr 10. PMID: 40220976.

Tsap MI, Shcherbata HR. The balancing act between lipid droplets and lysosomes for membrane functionality in age-related neurodegeneration and inflammation. Prog Lipid Res. 2025 Jul;99:101341. doi:10.1016/j.plipres.2025.101341. Epub 2025 Jun 5. PMID: 40482724.

Becker Y, Tkachuk S, Jörns A, Shushakova N, Rong S, Alwakaa A, Hegermann J, Schenk H, Kiyan Y, Haller H. Heparanase 2 Modulates Vascular Permeability via Heparan Sulfate-Dependent Growth Factor Signaling. Arterioscler Thromb Vasc Biol. 2025 Oct;45(10):1835-1851. doi: 10.1161/ATVBAHA.125.323060. Epub 2025 Aug 21. PMID:40836917. PMCID: PMC12685291.

Blair BA, Bragdon E, Dhillon G, Baker N, Stasiak L, Muthig M, Miramon P, Lorenz MC, Wheeler RT. Forward genetic screen in zebrafish identifies new fungal regulators that limit host-protective <i>Candida</i>-innate immune interaction. mBio. 2025 May 14;16(5):e0052925. doi: 10.1128/mbio.00529-25. Epub 2025 Apr 2. PMID:40172223. PMCID: PMC12077120.

Girard LR, Cousins SR, Heald AC, Tanzey DA, Omo EM, Flannigan CR, Chung H-M, Tarbox BP, Savage EF. Genome sequence of bacteriophage PensacolaC28 isolated using Microbacterium. Casco Bay. Microbiol Resour Announc. 2025 Mar 11;14(3):e0114624. doi: 10.1128/mra.01146-24. Epub 2025 Feb 20. PMID:39976464. PMCID: PMC11895466.

Spaulding EL, Updike DL. Intrinsically disordered arginine-glycine repeat domains tune sub-nucleolar compartmentalization in Caenorhabditis elegans. Genetics. 2025 Jun 4;230(2):iyaf067. doi: 10.1093/genetics/iyaf067. PMID:40192507. PMCID: PMC12135204.

Petropoulos IS, Jordan AE, Dickinson PS, Powell DJ. Peptidergic Modulation of the Lobster Cardiac System Has Opposing Action on Neurons and Muscles. Integr Org Biol. 2025 Jan 24;7(1):obaf002. doi: 10.1093/iob/obaf002. PMID:39944058. PMCID: PMC11816307.

Young MG, Just J, Lee YJ, McMahon T, Gonzalez J, Fuentes P, Noh S, Angelini DR. Seasonally increasing parasite load is associated with microbiota dysbiosis in wild bumblebees. mSystems. 2025 Dec 17;10(12):e0118425. doi: 10.1128/msystems.01184-25. Epub 2025 Nov 18. PMID:41251470. PMCID: PMC12710312.

Chen A, Covitz RM, Folsom AA, Mu X, Peck RF, Noh S. Symbiotic T6SS affects horizontal transmission of <i>Paraburkholderia bonniea</i> among <i>Dictyostelium discoideum</i> amoeba hosts. ISME Commun. 2025 Jan 14;5(1):ycaf005. doi: 10.1093/ismeco/ycaf005. PMID:40046898. PMCID: PMC11882306.

Gajjar G, Huggins HP, Kim ES, Huang W, Bonnet FX, Updike DL, Keiper BD. Two eIF4E paralogs occupy separate germ granule messenger ribonucleoproteins that mediate mRNA repression and translational activation. Genetics. 2025 May 8;230(1):iyaf053. doi: 10.1093/genetics/iyaf053. PMID:40119742. PMCID: PMC12059638.

Menard R, Baanannou A, Halluin C, Morse D, Kuhn S, Graber JH, Strickland J, Madelaine R. The small molecule ML233 is a direct inhibitor of tyrosinase function. Commun Biol. 2025 Mar 28;8(1):506. doi: 10.1038/s42003-025-07973-5. PMID:40155764. PMCID: PMC11953452.

Foulger AC, Jordan NA, Castle A, Bhaumik D, Andersen JK, Lithgow GJ, Angeli S. Germline regulation of the intestinal mitochondrial unfolded protein response. Geroscience. 2025 Nov 7;. doi: 10.1007/s11357-025-01890-5. [Epub ahead of print] PubMed PMID:41204020.

England AE, Collins SD, Emmerling CL, Mason MD, Smith RL. High speed microturbine mixer for kinetically controlled synthesis. Lab on a chip. 2025 August 5;25(16):4071-4080. PubMed PMID:40641366. PubMed Central PMCID: PMC12246819; DOI: 10.1039/d5lc00488h.

Bonauto SM, Patel KA, Honeycutt JA. 22 and 50 kHz rat ultrasonic vocalization playback reveals sex differences in beavior and cFos in brain regions associated with affective processing. Behavioural Brain Research 2025 Feb; 478:115326 PMID: 39521142.

Obeng B, Bennett LJ, West BE, Wagner DJ, Fleming PJ, Tasker MN, Lorenger MK, Smith DR, Systuk T, Plummer SM, Eom J, Paine MD, Frangos CT, Wilczek MP, Shim JK, Maginnis MS, Gosse JA. Anti-microbial cetylpyridinium chloride suppresses mast cell function by targeting tyrosine phosphorylation of Syk kinase. J Immunotoxicol. Epub 2025 Jan 15. PMID: 39815634.

2024

Allers S, O’Connell KA, Carlson T, Belardo D, King BL. Reusable tutorials for using cloud-based computing environments for the analysis of bacterial gene expression data from bulk RNA sequencing. Brief Bioinform. 2024 May 23;25(4):bbae301. PMID: 38997128. PMC11245317.

Barrett KA, Kassama FJ, Surks W, Mulholland AJ, Moulton KD, Dube DH. Helicobacter pylori glycan biosynthesis modulates host immune cell recognition and response. Front Cell Infect Microbiol. 2024;14:1377077. PMID: 38572314.

Bavis RW, Danielson MD, Dufour G, Hanus J, Pratt AE, Tobin KE. Respiratory plasticity induced by chronic hyperoxia in juvenile and adult rats. Respir Physiol Neurobiol 2024 Dec 26:333:104386. PMID:39732308.

Bavis RW, Lee DI, Kinnally AC, Puxton PE. Recovery of ventilatory and metabolic responses to hypoxia in neonatal rats after chronic hypoxia. Respiratory Physiology and Neurobiology 2024 Nov; 329: 104317. PMID: 39187051. PMC11385746.

Bond ACS, Crocker MA, Wilczek MP, DuShane JK, Sandberg AL, Bennett LJ, Leclerc NR, Maginnis MS. High-throughput drug screen identifies calcium and calmodulin inhibitors that reduce JCPyV infection. Antiviral Res. 2024 Feb;222:105817. PMID: 38246207.

Blum, J.A. , Wells, M. , Huxley-Reicher, Z. , Johnson, J.E., and Bateman, J.R. 2024 Feb 7;14(2):jkad255. Transvection between non-allelic genomic positions in Drosophila . G3: Genes, Genomes, Genetics. PMID: 37949840. PMCID: PMC10849331.

Breton, T.S., M.E. Oliveira, T. Chillemi, W. Harriman, J. Korasadowicz, E. Saverese, E. Bourget, C.A. Murray, C.J. Martyniuk, M.A. DiMaggio. 2024. Spatial and quantitative gene expression analysis of SREB receptors in the gonads of green-spotted pufferfish (Dichotomyctere nigroviridis). PMID: 39536984.

De Niz M, Escobedo García R,Terán Ramirez C, Pakowski Y, Abonza Y, Bialy N, Orr VL, Olivera A, Abonza V, Alleva K, Allodi S, Almeida MF, Becerril Cuevas AR, Bonnet F, et al. Building momentum through networks: Bioimaging across the Americas. Journal of microscopy. 2024 June;294(3):420-439. PMID: 38747464. PMC11152921.

Gajjar G, Huggins HP, Kim ES, Huang W, Bonnet FX, Updike DL, Keiper BD. Two germ granule eIF4E isoforms reside in different mRNPs to hand off C elegans mRNAs from translational repression to activation. bioRxiv. May 26:2024.05.24.595216. PMID: 38826235; PMC11142241.

Graber JH, Hoskinson D, Liu H, Kaczmarek Michaels K, Benson PS, Maki NJ, Wilson CL, McGrath C, Puleo F, Pearson E, Kuehner JN, Moore C. Mutations in yeast Pcf11, a conserved protein essential for mRNA 3’ end processing and transcription termination, elicit the Environmental Stress Response. Genetics. 2024 Feb 7;226(2). PMID: 37967370.

Granata L, Chang A, Shaheed H, Shinde A, Kulkarni P, Satpute A, Brenhouse HC, Honeycutt JA. Examining brain activity responses during rat ultrasonic vocalization playback: Insights from a novel fMRI translational paradigm. eNeuro 2024 Sept;11; ENEURO.0179-23.2024.

Jackman WR, Miranda Portillo LS, Cox CK, Ambrosio A, Gibert Y. Blocking endogenous retinoic acid degradation induces oral tooth formation in zebrafish. Proc Natl Acad Sci U S A. 2024 Mar 12;121(11):e2321162121. PMID: 38446853.

López-García I, Oh S, Chaney C, Tsunezumi J, Drummond I, Oxburgh L, Carroll TJ, Marciano DK.López-García I, et al Epithelial tubule interconnection driven by HGF-Met signaling in the kidney..Proc Natl Acad Sci U S A. 2024 Dec 24;121(52):e2416887121. PMID:39705305.

Ma Z, Sharma R, Rogers AN. Physiological Consequences of Nonsense-Mediated Decay and Its Role in Adaptive Responses. Biomedicines. 2024 May 16;12(5). PMID: 38791071. PMC11117581.

Masselink W, Murawala P et al. The evolutionary origin and mechanism of chordate tail regeneration. An ancient tale? Cells Dev. 2024 Dec 18:203988. Online ahead of print.Cells Dev. 2024.PMID:39706570.

Min H, Spaulding EL, Sharp CS, Garg P, Jeon E, Miranda Portillo LS, Lind NA, Updike DL.Min H, et al A role for BYN-1/bystin in cellular uptake and clearance of residual bodies in the Caenorhabditis elegans germline. Development. 2024 Oct 1;151(19):dev202694. Development. PMID:39377446.

Mir DA, Ma Z, Horrocks J, Rogers AN. Stress-induced Eukaryotic Translational Regulatory Mechanisms. ArXiv. 2024 May 2. PMID: 38745702. PMC11092689.

Moran Sosa L, Taylor A, Garretson AC, Backus A, Richards K, Graber JH, Hilliard RF, Disney JE. Examining Potential PFAS Contamination of Private Wells from a High School in Rural Maine. Environ Health Perspect. 2024 Dec;132(12):127701. doi: 10.1289/EHP14653. PMID: 39625080. PMC11613431.

Mostafa SM, Wang L, Tian B, Graber J, Moore C.Mostafa SM, et al Transcriptomic analysis reveals regulation of adipogenesis via long non-coding RNA, alternative splicing, and alternative polyadenylation..Sci Rep. 2024 Jul 23;14(1):16964. PMID:39043790.

Ngo VN, Winski DP, Aho B, Kamath PL, King BL, Waters H, Zimmerberg J, Sodt A, Hess ST. Conserved sequence features in intracellular domains of viral spike proteins. Virology. 2024 Nov;599:110198. PMID: 39116647; PMC11383743.

Noh S, Peck RF, Larson ER, Covitz RM, Chen A, Roy P, Hamilton MC, Dettmann RA. Facultative symbiont virulence determines horizontal transmission rate without host specificity in Dictyostelium discoideum social amoebas. Evolution letters. 2024 June;8(3):437-447. PMID: 38818420. PMC11134466.

Obeng B., West B.E., Fleming P.J., Bennett L., Shim J.K., Wagner D., Systuk T., Frangos C., Tasker M., Smith D., Paine M., Wilczek M., Lorenger M., Ledue E.L., Maginnis M., Gosse J.A., 2024. Mechanisms of Cetylpyridinium Chloride Inhibition of Immune Cell Function: Unraveling CPC Effects on Tyrosine Phosphorylation Events, The Toxicologist, a Supplement to Toxicological Sciences, Published Abstract #3453, p. 241.

Oezen G, Kraus L, Schentarra EM, Bolten JS, Huwyler J, Fricker G. Aluminum and ABC transporter activity. Environ Toxicol Pharmacol. 2024 Jun;108:104451. Epub 2024 Apr 20. PMID: 38648870.

Pecksen E, Tkachuk S, Schröder C, Vives Enrich M, Neog A, Johnson CP, Lachmann N, Haller H, Kiyan Y.Pecksen E, et al Monocytes prevent apoptosis of iPSCs and promote differentiation of kidney organoids.Stem Cell Res Ther. 2024 May 3;15(1):132. Stem Cell Res Ther. PMID:38702808.

Peterson SK, Ahmad ST. An overview of the association between circadian genes and ethanol tolerance in Drosophila;International Journal of Medical Sciences; 2024 Nov 24;25:12605. PMID: 39684317. PMC11641815.

Schmandt B, Diduff M , Smart G , Williams L. Environmentally-relevant concentrations of triphenyl phosphate (TPhP) impact cardiac development in zebrafish. Toxics. 2024 May 16;12(5):368. PMID: 38787147. PMC11125690.

Seaman RP, Campbell R, Doe V, Yosufzai Z, Graber JH.Seaman RP, et al. A cloud-based training module for efficient de novo transcriptome assembly using Nextflow and Google cloud. Brief Bioinform. 2024 May 23;25(4):bbae313. Brief Bioinform. PMID:38941113.

Soos BL, Ballinger A, Weinstein M, Foreman H, Grampone J, Weafer S, Aylesworth C, King BL. Color-Flu Fluorescent Reporter Influenza A Viruses Allow for In Vivo Studies of Innate Immune Function in Zebrafish. Viruses. 2024 Jan 20;16(1):155. PMID: 38275965. PMC10818453.

Spaulding EL, Updike DL. C. elegans nucleolar RG repeats are sufficient for nucleolar accumulation but insufficient for sub-nucleolar compartmentalization. bioRxiv. Dec 20:2024.12.19.629445. PMID: 39763969. PMC11702598.

Taylor A, Garretson A, Bieluch KH, Buckman KL, Lust H, Bailey C, Farrell AE, Jackson BP, Lincoln R, Arneson E, Hall SR, Stanton BA, Disney JE.Taylor A, et al. A Mixed Methods Approach to Understanding the Public Health Impact of a School-Based Citizen Science Program to Reduce Arsenic in Private Well Water. Environ Health Perspect. 2024 Aug;132(8):87006. Epub 2024 Aug 21.Environ Health Perspect. PMID:39166865

Thu Y. Multi-faceted roles of SUMO in DNA metabolism. Nucleus. 2024 Dec;15(1):2398450. Review. PMID: 39287196. PMC11409511.

Tsap MI, Yatsenko AS, Hegermann J, Beckmann B, Tsikas D, Shcherbata HR. Unraveling the link between neuropathy target esterase NTE/SWS, lysosomal storage diseases, inflammation, abnormal fatty acid metabolism, and leaky brain barrier. Elife. 2024 Apr 25;13. PMID: 38660940.

Weller SR*, Burnell JE*, Aho BM*, Obeng B, Ledue EL, Shim JK, Hess ST, Gosse JA. Antimicrobial cetylpyridinium chloride causes functional inhibition of mitochondria as potently as canonical mitotoxicants, nanostructural disruption of mitochondria, and mitochondrial Ca2+ efflux in living rodent and primary human cells. Food Chem Toxicol. 186:114547. Epub 2024 Feb 24. PMID: 38408634. PMC11060648.

KEY:
† or # denotes INBRE project leader
* denotes an INBRE-funded undergraduate student

2023

Soos BL, Ballinger A, Weinstein M, Foreman H, Grampone J, Weafer S, Aylesworth C, King BL. Multi-spectral Fluorescent Reporter Influenza A Viruses Allow for in vivo Studies of Innate Immune Function in Zebrafish. bioRxiv  Prepr Serv Biol. 2023 Nov 2; PMID: 37961402.

Tremblay S*, Zeng Y*, Yue A*, Chabot K*, Mynahan A*, Desrochers S*, Bridges S*, and Ahmad ST#. Caffeine delays ethanol-induced sedation in Drosophila. Biology (Basel) 2023 Jan; 12:63. PMCID: PMC9855986.

Breton, T.S.†, Murray, C.A., Huff, S.R.* et al. Phoenixin-14 alters transcriptome and steroid profiles in female green-spotted puffer (Dichotomyctere nigroviridis). Sci Rep12, 9454 (2022). PMCID: PMC9177834. 

2021

Babich R, Craig E, Muscat A, Disney J, Farrell A, Silka L, Jayasundara N. Defining drinking water metal contaminant mixture risk by coupling zebrafish behavioral analysis with citizen science. Sci Rep. 2021 Aug;11(1):17303. PMID: 34453073. PMC8397788.

Bailey C, Farrell A, Purty T, Taylor A, Disney J. Development of Privacy Features on Anecdata.org, a Free Citizen Science Platform for Collecting Datasets for Climate Change and Related Projects. Front Clim. 2021 Apr;3. PMID: 34541525. PMC8444998.

Batchelder K*, Ward L, Collins E*, Miles C*, Palm S, Mohamed A, † Feinstein L. Draft Genome Sequences of Cefepime-Resistant and-Susceptible Escherichia coli Strains and Imipenem-Resistant and-Susceptible Pseudomonas aeruginosa Strains. Microbiology Resource Announcements 2021 Dec 2. PMID: 34854701. PMC8638605.

Bondada V, Gal J, Mashburn C, Rodgers DW, Larochelle KE, Croall DE, Geddes JW. The C2 domain of calpain 5 contributes to enzyme activation and membrane localization. Biochim Biophys Acta Mol Cell Res. 2021 Jun;1868(7):119019. doi: 10.1016/j.bbamcr.2021.119019. Epub 2021 Mar 31. PMID: 33811937. PMCID: PMC8588747.

† Breton TS, Sampson WGB, Clifford B, Phaneuf AM, Smidt I, True T, Wilcox AR, Lipscomb T, Murray C, DiMaggio MA. Characterization of the G protein-coupled receptor family SREB across fish evolution. Sci Rep [Internet]. 2021;11(1):12066. Available from: http://www.ncbi.nlm.nih.gov/pubmed/34103644 PMID: 34103644. PMC8187511.

Child MB 6th, Bateman JR, Jahangiri A, Reimer A, Lammers NC, Sabouni N, Villamarin D , McKenzie-Smith GC , Johnson JE, Jost D, Garcia HG. (2021) Live imaging and biophysical modeling support a button-based mechanism of somatic homolog pairing in Drosophila . Elife. 2021 Jun 8;10:e64412. doi: 10.7554/eLife.64412. PMID: 34100718; PMCID: PMC8294847.

Cushman, J., Freeman, E., Schumann, A., McCallister, S., Hutchison, K., † S.D. Molloy. 2021. Prophage alter intrinsic antibiotic resistance and expression of transcriptional regulator, whi B7, in Mycobacterium chelonae . BMC Microbiology 21: 176. PMID: 34107872. PMCID: PMC8191103.

Debuque RJ, Hart AJ, Johnson GH, Rosenthal NA, † Godwin JW. Identification of the Adult Hematopoietic Liver as the Primary Reservoir for the Recruitment of Pro-regenerative Macrophages Required for Salamander Limb Regeneration. Front cell Dev Biol. 2021;9:750587. PMID: 34568347. PMC8456783.

Debuque RJ, Nowoshilow S, Chan KE, Rosenthal NA, † Godwin JW. Distinct toll-like receptor signaling in the salamander response to tissue damage. Dev Dyn an Off Publ Am Assoc Anat. 2021 Apr; PMID: 33797128. PMC8484370.

DeLaney K, Hu M, Hellenbrand T, Dickinson PS, Nusbaum MP, Li L. Mass Spectrometry Quantification, Localization, and Discovery of Feeding-Related Neuropeptides in Cancer borealis. ACS chemical neuroscience. 2021 February 1. PubMed PMID: 33522802.

Ellis SN , Honeycutt JA*. Sex Differences in Affective Dysfunction and Alterations in Parvalbumin in Rodent Models of Early Life Adversity. Frontiers in Behavioral Neuroscience 2021 Nov; 15: 741454. PMID: 34803622. PMCID: PMC8600234.

Farrell A, Buckman K, Hall SR, Muñoz I, Bieluch K, Zoellick B, Disney J. Adaptations to a Secondary School-Based Citizen Science Project to Engage Students in Monitoring Well Water for Arsenic during the COVID-19 Pandemic. J STEM outreach. 2021 Jul;4(2). PMID: 34532651. PMCID: PMC8442737.

† Feinstein L, Batchelder K, Tilley L, Stafford G.Draft Genome Sequences of 27 Northern Maine Clinical Isolates. Microbiol Resour Announc. 2021 Feb 4;10(5):e01379-20. PMID: 33541879. PMCID: PMC7862957.

Gans IM, Coffman JA. Glucocorticoid-Mediated Developmental Programming of Vertebrate Stress Responsivity. Front Physiol. 2021;12:812195. doi: 10.3389/fphys.2021.812195. eCollection 2021. Review. PubMed PMID: 34992551; PubMed Central PMCID: PMC8724051  .

Gans IM, Grendler J, Babich R, Jayasundara N, Coffman JA. Glucocorticoid-Responsive Transcription Factor Krüppel-Like Factor 9 Regulates fkbp5 and Metabolism. Front cell Dev Biol. 2021;9:727037. PMID: 34692682. PMCID: PMC8526736.

Goudeau J, Sharp CS, Paw J, Savy L, Leonetti MD, York AG, Updike DL, Kenyon C, Ingaramo M. Split-wrmScarlet and split-sfGFP: tools for faster, easier fluorescent labeling of endogenous proteins in Caenorhabditis elegans. Buelow H, editor. Genetics [Internet]. 2021 Feb 2; PMID: 33693628. PMCID: PMC8049552.

Kohorn BD, Greed B *, Verger S, Mouille G, Kohorn SL. Effects of Arabidopsis wall associated kinase mutations on ESMERALDA1 and elicitor induced ROS. PLoS One. 2021 May 20;16(5):e0251922. doi: 10.1371/journal.pone.0251922. eCollection.PMID: 34015001. PMCID: PMC8136723.

Kohorn BD, Zorensky* F, Meldrum* JD, Mouille G, Kohorn SL. Mutation of an Arabidopsis Golgi Membrane Protein ELMO1 Reduces Cell Adhesion. Development. 2021 May 15;148(10):dev199420. doi: 10.1242/dev.199420. PMID: 34015094. PMCID: PMC8180255.

Kruse M*, Whitten RJ .Control of Neuronal Excitability by Cell Surface Receptor Density and Phosphoinositide Metabolism. Frontiers in Pharmacology 2021 12:663840. PMID: 33967808. PMCID: PMC8097148.

Lee J-Y, Davis I, Youth EHH, Kim J, Churchill G, Godwin J, Korstanje R, Beck S. Misexpression of genes lacking CpG islands drives degenerative changes during aging. Sci Adv. 2021 Dec;7(51):eabj9111. PMID: 34910517. PMC8673774.

Lee JY, Song J, LeBlanc L, Davis I, Kim J, Beck S. Conserved dual-mode gene regulation programs in higher eukaryotes. Nucleic Acids Res. 2021 Mar 18;49(5):2583-2597. doi: 10.1093/nar/gkab108. PubMed PMID: 33621342; PubMed Central PMCID: PMC7969006.

Lessard L, Smith C, O’Connor S, Velasquez SE, Benson J, Garfield J, Onoye J, Liou L. Collaborative Assessment Of Collective Reach And Impact Among INBRE Supported Summer Undergraduate Research Programs Across The United States. J STEM Educ. 2021 Apr-Jun;22(2):46-51. Epub 2021 Jul 29. PubMed PMID: 34413711; PubMed Central PMCID: PMC8373203.

Luong P,  † Dube DH. Dismantling the bacterial glycocalyx: chemical tools to probe, perturb, and image bacterial glycans. Bioorg. Med. Chem. 2021, 42, 116268. PMID: 34130219 PMCID: PMC8276522.

Muscato AJ , Walsh P , Pong S , Pupo A , Gross RJ , Christie AE, Hull JJ and Dickinson PS*. Does differential receptor distribution underlie variable responses to a neuropeptide in the lobster cardiac system? Int. J. Mol. Sci. 2021, 22(16), 8703. DOI: 10.3390/ijms22168703. PMID: 34445418, PMCID: PMC8395929.

† Noh, S.Linear paths to genome reduction in a defensive symbiont. Proceedings of the National Academy of Sciences 2021. PMID: 33975871. PMCID: PMC8179129.

Prasad M., Detchou D., Wang F., Kingston S., Ledwidge L, Horch, HW 2021. Transcriptional expression changes during compensatory plasticity in the terminal ganglion of the adult cricket Gryllus bimaculatus.  BMC Genomics 22, 742 https://doi.org/10.1186/s12864-021-08018-x PMID: 34649498. PMCID: PMC8518198.

Tilley L, Papadopoulos S-C, Pende M, Fei J-F, Murawala P. The use of transgenics in the laboratory axolotl. Dev Dyn an Off Publ Am Assoc Anat. 2021 May; PMID: 33949035. PMC8568732.

Wilczek MP, Armstrong FJ, Geohegan RP, Mayberry CL, DuShane JK, King BL, Maginnis MS. The MAPK/ERK Pathway and the Role of DUSP1 in JCPyV Infection of Primary Astrocytes. Viruses. 2021 Sep 14;13(9):1834. doi: 10.3390/v13091834. PMID: 34578413; PMCID: PMC8473072.

Wilczek MP, Armstrong FJ, Mayberry CL, King BL, Maginnis MS. PI3K/AKT/mTOR Signaling Pathway Is Required for JCPyV Infection in Primary Astrocytes. Cells. 2021 November 18;10(11). PMID: 34831441. PMCID: PMC8624856.

† Sullivan C, Soos BL, Millard PJ, Kim CH, King BL. Modeling Virus-Induced Inflammation in Zebrafish: A Balance Between Infection Control and Excessive Inflammation. Front Immunol. 2021 May 7;12:636623. doi: 10.3389/fimmu.2021.636623. PMID: 34025644; PMCID: PMC8138431.

† Banks B , A McDonough, D Whittington, D Murray. An Active Approach to Teaching Central Dogma. The FASEB Journal. 14 May 2021. DOI: 10.1096/fasebj.2021.35.s1.01708. Proceedings of the American Society for Biochemistry and Molecular Biology 2021.

Engevik K, † L Banks , J Petrosino, M Engevik, J Hyser. Exploring the interaction between rotavirus and Lactobacillus. The FASEB Journal. 14 May 2021. DOI: 10.1096/fasebj.2021.35.s1.04505. Proceedings of Experimental Biology 2021.

Bhanot S, Hemminger G, Martin CL, Aller SG, Forrest JNJ. A nonolfactory shark adenosine receptor activates CFTR with unique pharmacology and structural features. Am J Physiol Cell. May 1, 2021. PMID: 33689481. PMC8163574.

Cardenas-Rodriguez M, Austin-Tse C, Bergboer JGM, Molinari E, Sugano Y, Bachmann-Gagescu R, Sayer JA, Drummond IA. Genetic compensation for cilia defects in cep290 mutants by upregulation of cilia-associated small GTPases. J Cell Sci. 2021 Jul;134(14). PMID: 34155518. PMC8325957

Djenoune L, Tomar R, Dorison A, Ghobrial I, Schenk H, Hegermann J, Beverly-Staggs L, Hidalgo-Gonzalez A, Little MH, Drummond IA. Autonomous Calcium Signaling in Human and Zebrafish Podocytes Controls Kidney Filtration Barrier Morphogenesis. J Am Soc Nephrol. 2021 Apr;32(7):1697?1712. PMID: 33911000. PMCID: PMC8425667.

Etzrodt V, Idowu TO, Schenk H, Seeliger B, Prasse A, Thamm K, Pape T, Müller-Deile J, van Meurs M, Thum T, Garg A, Geffers R, Stahl K, Parikh SM, Haller H, David S. Role of endothelial microRNA 155 on capillary leakage in systemic inflammation. Crit Care. 2021 Feb;25(1):76. PMID: 33618730. PMC7901081.

Fisher CR, Kratovil JD, Angelini* DR, Jockusch EL. Out from under the wing: reconceptualizing the insect wing gene regulatory network as a versatile, general module for body-wall lobes in arthropods. Proceedings of the Royal Society B 2021 Dec; 288: 20211808. PMID: 34933597. PMCID: PMC8692954.

Geraghty S , Koutsouveli V, Hall C, Chang L , Sacristan-Soriano O, Hill MS, Riesgo A, Hill AL. Establishment of host:algal endosymbioses: Genetic response to symbiont versus prey in a sponge host. Genome Biology and Evolution 2021 Nov;13: evab252. PMID: 34791195. PMCID: PMC8633732.

Khaitov V, Marchenko J, Katolikova M, Väinölä R, Kingston SE, Carlon DB, Gantsevich M, Strelkov P. Species identification based on a semi-diagnostic marker: Evaluation of a simple conchological test for distinguishing blue mussels Mytilus edulis L. and M. trossulus Gould. PLoS One. 2021 Jul 23;16(7):e0249587. doi: 10.1371/journal.pone.0249587. PMID: 34297723; PMCID: PMC8301678.

Liao CM, Wulfmeyer VC, Swallow M, Falk CS, Haller H, Korstanje R, Melk A, Schmitt R. Induction of Stress-Induced Renal Cellular Senescence In Vitro: Impact of Mouse Strain Genetic Diversity. Cells. 2021 Jun;10(6). PMID: 34201242. PMC8229707.

Losick VP, Duhaime LG. The endocycle restores tissue tension in the Drosophila abdomen post wound repair. Cell Rep [Internet]. 2021 Oct 12;37(2):109827. PMID: 34644579. PMC8567445.

Mayberry CL, Wilczek MP, Fong TM, Nichols SL, Maginnis MS†. GRK2 mediates -arrestin interactions with 5-HT(2) receptors for JC polyomavirus endocytosis. J Virol. 2021 Jan 13:JVI.02139-20. doi: 10.1128/JVI.02139-20. Online ahead of print. PMID: 33441347.

Sant KE, Moreau HM, Williams LM†, Jacobs HM, Bowsher AM, Boisvert JD, Smolowitz RM, Pantazis J, Annunziato K, Nguyen M, Timme-Laragy A. Embryonic exposures to mono-2-ethylhexyl phthalate induce larval steatosis in zebrafish independent of Nrf2a signaling. J Dev Orig Health Dis. 2021 Feb;12(1):132-140. doi: 10.1017/S2040174420000057. Epub 2020 Feb 17. PMID: 32063256. PMCID: PMC7429360.

2020

Bavis* RW, Song MJ , Smachlo JP ,Hulse A ,Kenison HR ,Peralta JN , Place JT ,Triebwasser S ,Warden SE , McDonough AB. Ventilatory and carotid body responses to acute hypoxia in rats exposed to chronic hypoxia during the first and second postnatal weeks. Respir Physiol Neurobiol. 2020 Jan 29;:103400. doi: 10.1016/j.resp.2020.103400. [Epub ahead of print] PubMed PMID: 32006667; NIHMSID:NIHMS1556884

Horch HW, Spicer S, Low IIC, Joncas C, Quenzer E, Okoya H,  Ledwidge LM, Fisher H Characterization of plexinA  and two distinct semaphorin1a  transcripts in the developing and adult cricket Gryllus bimaculatus.  J Comp Neurol. 2020; 528(4):687-702. PMID: 31621906. PMCID: PMC6944777

Olins AL, Gould TJ, Boyd L, Sarg B, Olins DE. Hyperosmotic stress: in situ chromatin phase separation. Nucleus. 2020 Dec;11(1):1-18. doi: 10.1080/19491034.2019.1710321. PubMed PMID: 31924112; PubMed Central PMCID: PMC6973338.

Besen-McNally R, Gjelsvik KJ, Losick VP. Wound-induced polyploidization is dependent on integrin-yki signaling. Biol Open. 2020 Dec 22:bio.055996. doi: 10.1242/bio.055996. PMID: 33355119.

Blaszkiewicz M, Wood E, Koizar S, Willows J, Anderson R, Tseng YH, Godwin J, Townsend KL. The involvement of neuroimmune cells in adipose innervation. Mol Med. 2020 Dec 9;26(1):126. doi: 10.1186/s10020-020-00254-3. PMID: 33297933. PMCID: PMC7727151.

Christie AE, Hull JJ, Dickinson PS. Assessment and comparison of putative amine receptor complement/diversity in the brain and eyestalk ganglia of the lobster, Homarus americanus. Invert Neurosci. 2020 Mar 26;20(2):7. doi: 10.1007/s10158-020-0239-5. PMID: 32215729. PMCID: PMC7327442.

Christie AE, Hull JJ, Dickinson PS. In silico analyses suggest the cardiac ganglion of the lobster, Homarus americanus, contains a diverse array of putative innexin/innexin-like proteins, including both known and novel members of this protein family. Invert Neurosci. 2020 Mar 2;20(2):5. doi: 10.1007/s10158-020-0238-6. PMID: 32115669. PMCID: PMC7310867.

Christie AE, Rivera CD*, Call CM*,  Dickinson PS, Stemmler EA, Hull JJ. 2020. Multiple transcriptome mining coupled with tissue specific molecular cloning and mass spectrometry provide insights into agatoxin-like peptide conservation in decapod crustaceans. Gen Comp Endocrinol. 2020, Dec 1;299:113609. doi: 10.1016/j.ygcen.2020.113609. PMID: 32916171. PMCID: PMC7747469.

Cirrincione AM, Pellegrini AD, Dominy JR, Benjamin ME, Utkina-Sosunova I, Lotti F, Jergova S, Sagen J, Rieger S. Paclitaxel-induced peripheral neuropathy is caused by epidermal ROS and mitochondrial damage through conserved MMP-13 activation. Sci Rep. 2020 Mar 4;10(1):3970. doi: 10.1038/s41598-020-60990-8. PMID: 32132628. PMCID: PMC7055229.

Engevik MA, † Banks LD, Engevik KA, Chang-Graham AL, Perry JL, Hutchinson DS, Ajami NJ, Petrosino JF, Hyser JM. Rotavirus infection induces glycan availability to promote ileum-specific changes in the microbiome aiding rotavirus virulence. Gut Microbes. 2020 Sep 2;11(5):1324-1347. doi: 10.1080/19490976.2020.1754714. Epub 2020 May 13. PMID: 32404017. PMCID: PMC7524290.

Gans I, Hartig EI, Zhu S, Tilden AR, Hutchins LN*, Maki NJ*, Graber JH*, Coffman JA. Klf9 is a key feedforward regulator of the transcriptomic response to glucocorticoid receptor activity. Sci Rep. 2020 Jul 10;10(1):11415. doi: 10.1038/s41598-020-68040-z. PMID: 32651405. PMCID: PMC7351738.

Greer CB, Wright J, Weiss JD, Lazerenko RM, Moran SP, Zhu J, Chronister KS, Jin AY, Kennedy* AJ, Sweatt JD, Kaas GA. Tet1 isoforms differentially regulate gene expression, synaptic transmission and memory in the mammalian brain. The Journal of neuroscience : the official journal of the Society for Neuroscience. 2020:JN-RM-1821-20. doi: 10.1523/JNEUROSCI.1821-20.2020. PubMed PMID: 33262245. PMC7842754.

Hartig EI, Zhu S, King BL, Coffman JA. Chronic cortisol exposure in early development leads to neuroendocrine dysregulation in adulthood. BMC Res Notes . 2020;13(1):366. doi:10.1186/s13104-020-05208-w. PMID: 32746894, PMCID: PMC7398215.

Heissenberger C, Rollins JA, Krammer TL, Nagelreiter F, Stocker I, Wacheul L, Shpylovyi A, Tav K, Snow S, Grillari J, Rogers AN, Lafontaine DLJ, Schosserer M. The ribosomal RNA m(5)C methyltransferase NSUN-1 modulates healthspan and oogenesis in Caenorhabditis elegans. Elife. 2020 Dec 8;9:e56205. doi: 10.7554/eLife.56205. PMID: 33289480 PMCID: PMC7746234.

Hudson R*, de Graaf R , Strandoo Rodin M, Ohno A, Lane N, McGlynn SE, Yamada YMA, Nakamura R, Barge LM, Braun D, Sojo V. CO2 reduction driven by a pH gradient. Proc Natl Acad Sci U S A. 2020 Sep 15;117(37):22873-22879. doi: 10.1073/pnas.2002659117. Epub 2020 Sep 8. PMID: 32900930; PMCID: PMC7502746.

Hull JJ, Stefanek MA , Dickinson PS*, Christie AE. Cloning of the first cDNA encoding a putative CCRFamide precursor identification of the brain, eyestalk ganglia, and cardiac ganglion as sites of CCRFamide expression in the American lobster, Homarus americanus.  Invert Neurosci. 2020 Nov 26;20(4):24. doi: 10.1007/s10158-020-00257-z. PMID: 33244646. PMCID: PMC7784615.

Lee SD, Liu HY, Graber JH*, Heller-Trulli D, Kaczmarek Michaels K, Cerezo JF, Moore CL. Regulation of the Ysh1 endonuclease of the mRNA cleavage/polyadenylation complex by ubiquitin-mediated degradation. RNA Biol. 2020 May;17(5):689-702. doi: 10.1080/15476286.2020.1724717. Epub 2020 Feb 12. PMID: 32009536. PMC7237158.

Moulton KD,  Adewale AP , Carol HA ,Mikami SA , and Dube DH. Metabolic glycan labeling-based screen to identify bacterial glycosylation genes. ACS Infect Dis. 2020 Dec 11;6(12):3247-3259. doi: 10.1021/acsinfecdis.0c00612. PMID: 33186014. PMCID: PMC7808405.

Oleisky ER, Stanhope ME* , Hull JJ, Christie AE, Dickinson PS*. 2020. Differential neuropeptide modulation of premotor and motor neurons in the lobster cardiac ganglion. J Neurophysiol. 124(4):1241-1256. doi: 10.1152/jn.00089.2020. Epub 2020 Aug 5. PMID: 32755328. PMCID: PMC7654637.

Robledo RF, Ciciotte SL, Graber JH*, Zhao Y, Lambert AJ, Gwynn B, Maki NJ*, Brindley EC, Hartman E, Blanc L, Peters LL. Differential effects of RASA3 mutations on hematopoiesis are profoundly influenced by genetic background and molecular variant. PLoS Genet. 2020 Dec 28;16(12):e1008857. doi: 10.1371/journal.pgen.1008857. eCollection 2020 Dec. PMID: 33370780. PMCID: PMC7793307.

Sangroula S, Baez Vasquez AY, Raut P, Obeng B, Shim JK, Bagley GD, West BE, Burnell JE, Kinney MS, Potts CM, Weller SR, Kelley JB, Hess ST, Gosse JA. Triclosan disrupts immune cell function by depressing Ca(2+) influx following acidification of the cytoplasm. Toxicol Appl Pharmacol. 2020 Oct 15;405:115205. doi: 10.1016/j.taap.2020.115205. Epub 2020 Aug 21. PMID: 32835763. PMCID: PMC7566221.

Teif VB, † Gould TJ, Clarkson CT, Boyd L, Antwi EB, Ishaque N, Olins AL, Olins DE. Linker histone epitopes are hidden by in situ higher-order chromatin structure. Epigenetics & Chromatin 2020 Jun 6;13(1):26. PMID: 32505195.PMCID: PMC7276084.

Bailey EC, Dehn AS, Gjelsvik KJ, Besen-McNally R, Losick VP. A Drosophila Model to Study Wound-induced Polyploidization. J Vis Exp. 2020 Jun 9;(160). doi: 10.3791/61252. PMID: 32597839.

Bernacki LE, Kilpatrick CW. Structural Variation of the Turtle Mitochondrial Control Region. J Mol Evol. 2020 Sep;88(7):618-640. doi: 10.1007/s00239-020-09962-0. Epub 2020 Aug 18. PMID: 32808073.

Cheema MS, Good KV, Kim B, Soufari H, OSullivan C, Freeman ME, Stefanelli G, Casas CR, Zengeler KE , Kennedy* AJ, Lopez JME, Howard PL, Zovkic IB, Shabanowitz J, Dryhurst DD, Hunt DF, Mackereth CD, Ausió J. Deciphering the Enigma of the Histone H2A.Z-1/H2A.Z-2 Isoforms: Novel Insights and Remaining Questions. Cells. 2020;9(5):1167. doi: 10.3390/cells9051167. PubMed PMID: PMID: 32397240. PMCID: PMC7290884.

Kenny NJ, Francis WR, Rivera-Vicéns RE, Jurval K, de Mendoza A, Díez-Vives C, Lister R, Bezares-Calderon L, Grombacher L, Roller M, Barlow LD, Camilli S , Ryan JF, Wöheide G, Hill AL, Riesgo A, Leys SP. Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri. Nature Communications 2020 July 27;11(1): 3676. PMID: 32719321. PMCID: PMC7385117.

Snow S , Bacon E , Bergeron J , Katzman D , Wilhelm A , Lewis O , Syangtan D , Calkins A, Archambault L, Anacker ML, Schlax PJ. Transcript decay mediated by RNase III in Borrelia burgdorferi. Biochemical and Biophysical Research Communications 2020 Aug 20;529(2):386-391. PMID: 32703440. PMCID: PMC7427566.

Ewing HA, Weathers KC, Cottingham KL, Leavitt PR, Greer ML, Carey CC, Steele BG, Fiorillo AU , Sowles JP . New cyanobacterial blooms are not new: two centuries of lake production are related to ice cover and land use. Ecosphere 2020 Jun 17;11(6):e03170.

2019

B Assis A, Bevier CR*, Barreto CC, Navas CA. Environmental influences on and antimicrobial activity of the skin microbiota of Proceratophrys boiei  (Amphibia, Anura) across forest fragments. 2019 Ecology and Evolution PMID: 32015853. PMCID: PMC6988551

Barry SK ., Nakamura T, Matsuoka Y, Straub C, Horch, HW, Extavour CG. . Injecting Gryllus bimaculatus  eggs. J. Vis. Exp.   2019 Aug 22;(150), e59726, doi:10.3791/59726. PMID: 31498320 PMCID: PMC6944197.

Bateman JR* , Anderson DJ. Taming the giant within. PLoS Genet. 2019 May 9;15(5):e1008098. doi: 10.1371/journal.pgen.1008098. eCollection 2019 May. PMID: 31071083. PMCID: PMC6508613.

Breton TS, Prentiss NK. Metal stress-related gene expression patterns in two marine invertebrates, Hediste diversicolor (Annelida, Polychaeta) and Littorina littorea (Mollusca, Gastropoda), at a former mining site. Comparative Biochemistry and Physiology Part C: Toxicology and Pharmacology 2019 Aug; 225: 108588. PMID: 31400476 PMCID: PMC6744975.

Coffman JA* , Su YH. Redox regulation of development and regeneration. Curr Opin Genet Dev. Review. 2019 Aug;57:9-15. doi: 10.1016/j.gde.2019.06.002. Epub 2019 Jul 11. PMID: 31302472.

Dickinson PS*, Samuel HM , Stemmler EA, Christie AE. SIFamide peptides modulate cardiac activity differently in two species of Cancer crab. Gen Comp Endocrinol. 2019. 282:113204. doi: 10.1016/j.ygcen.2019.06.008. PMID: 31201801. PMCID: PMC6719312.

Gibert Y, Samarut E, Ellis MK, Jackman WR, Laudet V. The first formed tooth serves as a signalling centre to induce the formation of the dental row in zebrafish. Proc Biol Sci. 2019 Jun 12; 286(1904):20190401. doi: 10.1098/rspb.2019.0401. PMID: 31185860. PMCID: PMC6571473.

Grendler J, Lowgren S, Mills M, Losick VP. Wound-induced polyploidization is driven by Myc and supports tissue repair in the presence of DNA damage. Development. 2019 Aug 2;146(15). pii: dev173005. doi: 10.1242/dev.173005. PMID: 31315896. PMCID: PMC6703715.

King T , Johnson JE and Bateman JR. Position effects influence transvection in Drosophila melanogaster.  Genetics. 2019 Dec;213(4):1289-1299 PMID: 31611231. PMCID: PMC6893391.

Lee BK, Jang YJ, Kim M, LeBlanc L, Rhee C, Lee J, Beck S, Shen W, Kim J. Super-enhancer-guided mapping of regulatory networks controlling mouse trophoblast stem cells. Nature communications. 2019 October 18;10(1):4749. PubMed PMID: 31628347; PubMed Central PMCID: PMC6802173.

Li Q, Philip VM, Stearns TM, Bubier JA, King BL, Low BE, Wiles MV, Saeidian AH, Sundberg BA, Uitto J, Sundberg JP. Quantitative Trait Locus and Integrative Genomics Revealed Candidate Modifier Genes for Ectopic Mineralization in Mouse Models of Pseudoxanthoma Elasticum. J Invest Dermatol . 2019 Dec;139(12):2447-2457.e7. PMID: 31207231; PMCID: PMC6874750.

Mahringer A, Bernd A, Miller DS, Fricker G. Aryl hydrocarbon receptor ligands increase ABC transporter activity and protein expression in killifish (Fundulus heteroclitus) renal proximal tubules. Biol Chem. 2019 Sep 25;400(10):1335-1345. doi: 10.1515/hsz-2018-0425. PMID: 30913027.

Marnik EA, Fuqua JH, Sharp CS, Rochester JD, Xu EL, Holbrook SE, Updike DL. Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules. Genetics. 2019 Nov;213(3):923-939. doi: 10.1534/genetics.119.302670. Epub 2019 Sep 10. PMID: 31506335. PMCID: PMC6827368.

Reed KJ, Svendsen JM, Brown KC, Montgomery BE, Marks TN, Vijayasarathy T, Parker DM, Nishimura EO, Updike DL*, Montgomery TA. Widespread roles for piRNAs and WAGO-class siRNAs in shaping the germline transcriptome of Caenorhabditis elegans. Nucleic Acids Res. 2019 Dec 24. pii: gkz1178. doi: 10.1093/nar/gkz1178. [Epub ahead of print] PMID: 31872227.

Rollins JA, Shaffer D, Snow SS, Kapahi P, Rogers AN. Dietary restriction induces posttranscriptional regulation of longevity genes. Life Sci Alliance. 2019 Jun 28;2(4). pii: e201800281. doi: 10.26508/lsa.201800281. Print 2019 Aug. PMID: 31253655. PMCID: PMC6600014.

Shim JK, Caron MA, Weatherly LM, Gerchman LB, Sangroula S, Hattab S, Baez AY, Briana TJ, Gosse JA*. Antimicrobial agent triclosan suppresses mast cell signaling via phospholipase D inhibition. J Appl Toxicol. 2019 Dec;39(12):1672-1690. doi: 10.1002/jat.3884. Epub 2019 Aug 19. PMID: 31429102. PMCID: PMC6861621.

Skelly DA, Raghupathy N, Robledo RF, Graber JH, Chesler EJ. Reference Trait Analysis Reveals Correlations Between Gene Expression and Quantitative Traits in Disjoint Samples. Genetics. 2019 Jul;212(3):919-929. doi: 10.1534/genetics.118.301865. Epub 2019 May 21. PubMed PMID: 31113812; PubMed Central PMCID: PMC6614885.

Tian K, Henderson RE, Parker R, Brown A, Johnson JE, Bateman JR. Two modes of transvection at the eyes absent gene of Drosophila demonstrate plasticity in transcriptional regulatory interactions in cis and in trans. PLoS Genet. 2019 May 10;15(5):e1008152. doi: 10.1371/journal.pgen.1008152. PMID: 31075100. PMCID: PMC6530868.

Wilson C, Kavaler J, Ahmad ST*. Expression of a human variant of CHMP2B linked to neurodegeneration in Drosophila external sensory organs leads to cell fate transformations associated with increased Notch activity. Dev Neurobiol. 2019 Oct 6. doi: 10.1002/dneu.22722. PMID: 31587468.

Bateman JR* , Kassis JA. Homolog Pairing at the Push of a Button. Dev Cell. 2019 Nov 4;51(3):295-296. doi: 10.1016/j.devcel.2019.10.014. PMID: 31689384.

Lan J, Rollins JA, Zang X, Wu D, Zou L, Wang Z, Ye C, Wu Z, Kapahi P, Rogers AN, Chen D. Translational Regulation of Non-autonomous Mitochondrial Stress Response Promotes Longevity. Cell Rep. 2019 Jul 23;28(4):1050-1062.e6. doi: 10.1016/j.celrep.2019.06.078. PMID: 31340143. PMCID: PMC6684276.

Martino PA , Carlon DB, Kingston SE. Blue mussel (genus Mytilus ) transcriptome response to simulated climate change in the Gulf of Maine suggests ability to cope under moderate multivariate stress. J. of Shellfish Research 2019, 38(3):587-602.

Schenk H, Masseli A, Schroder P, Bolaños-Palmieri P, Beese M, Hegermann J, Bräsen JH, Haller H. Sulfatases, in Particular Sulf1, Are Important for the Integrity of the Glomerular Filtration Barrier in Zebrafish. Biomed Res Int. 2019 Jul 22;2019:4508048. doi: 10.1155/2019/4508048. eCollection 2019. PMID: 31428635. PMCID: PMC6679890.

Schenk H, Müller-Deile J, Schroder P, Bolaños-Palmieri P, Beverly-Staggs L, White R, Bräsen JH, Haller H, Schiffer M. Characterizing renal involvement in Hermansky-Pudlak Syndrome in a zebrafish model. Sci Rep. 2019 Nov 27;9(1):17718. doi: 10.1038/s41598-019-54058-5. PMID: 31776394. PMCID: PMC6881439.

Tossidou I, Teng B, Worthmann K, Müller-Deile J, Jobst-Schwan T, Kardinal C, Schroder P, Bolanos-Palmieri P, Haller H, Willerding J, Drost DM, de Jonge L, Reubold T, Eschenburg S, Johnson RI, Schiffer M. Tyrosine Phosphorylation of CD2AP Affects Stability of the Slit Diaphragm Complex. J Am Soc Nephrol. 2019 Jul;30(7):1220-1237. doi: 10.1681/ASN.2018080860. Epub 2019 Jun 24. PMID: 31235616. PMCID: PMC6622410.

Epstein TD , Wu B, Moulton KD., Yan M and Dube DH*. Sugar-modified analogs of auranofin are potent inhibitors of the gastric pathogen Helicobacter pylori.  ACS Infect Dis. 2019.  5(10):1682-1687, PMID: 31487153.

Rand LM, Woodward C, May R, Ackerman RA, Tweedie B, Zicarelli TB , Dearborn* DC. Divergence between genes but limited allelic polymorphism in two MHC class II A genes in Leach’s storm-petrels Oceanodroma leucorhoa.  Immunogenetics. 2019 Sep;7 71:561-573. PMID: 31506710.

Dickinson PS*, Hull JJ,Miller A ,Oleisky ER , Christie AE. 2019. To what extent may peptide receptor gene diversity/complement contribute to functional flexibility in a simple pattern-generating neural network? Comp Biochem Physiol Part D Genomics Proteomics. 2019 Jun; 30:262-282. PMID: 30974344.

2018

Weatherly LM, Nelson AJ, Shim J, Riitano AM, Gerson ED, Hart AJ, de Juan-Sanz J, Ryan TA, Sher R, Hess ST, Gosse JA. Antimicrobial agent triclosan disrupts mitochondrial structure, revealed by super-resolution microscopy, and inhibits mast cell signaling via calcium modulation. Toxicology and applied pharmacology. 2018 June 15;349:39-54. PubMed PMID: 29630968; PubMed Central PMCID: PMC6705416

Gjelsvik KJ, Besen-McNally R, Losick VP. Solving the Polyploid Mystery in Health and Disease. Trends Genet. 2019 Jan;35(1):6-14. doi: 10.1016/j.tig.2018.10.005. Epub 2018 Nov 21. PMID: 30470486. PMCID: PMC6457904.

Ariyachet C, Beißel C, Li X, Lorrey S*, Mackenzie O, Martin PM, O’Brien K, Pholcharee T*, Sim S*, Krebber H, McBride AE*. Post-translational modification directs nuclear and hyphal tip localization of Candida albicans mRNA-binding protein Slr1. Mol Microbiol. 2017 May;104(3):499-519. PMID: 28187496. PMCID: PMC5405739.

Andralojc KM, Campbell AC, Kelly AL, Terrey M, Tanner PC, Gans IM, Senter-Zapata MJ, Khokhar ES, Updike DL. ELLI-1, a novel germline protein, modulates RNAi activity and P-granule accumulation in Caenorhabditis elegans. PLoS Genet. 2017 Feb 9;13(2):e1006611. PMID: 28182654. PMCID: PMC5325599.

Breton TS*, Nettleton JC, O’Connell B, Bertocci M.  Fine-scale population genetic structure of sugar kelp, Saccharina latissima (Laminariales, Phaeophyceae), in eastern Maine, USA.  Phycologia 2017 Nov; 57 32-40. NIHMSID: 919539.

Carmody M, Notarianni, TP, Sambel LA, Walsh, SJ, Burke JM, Armstrong JL, Lawson TG. E6AP/UBE3A catalyzes encephalomyocarditis virus 3C protease polyubiquitylation and promotes its concentration reduction in virus-infected cells. Biochem Biophys Res Commun. 2017 Dec 9;494(1-2):63-69. PMID: 29054411. PMCID: PMC5675005.

Christie AE, Miller A, Fernandez R, Dickinson ES, Jordan A, Kohn J, Youn MC, Dickinson PS*. Non-amidated and amidated members of the C-type allatostatin (AST-C) family are differentially distributed in the stomatogastric nervous system of the American lobster, Homarus americanus. Invert Neurosci. 2018 Jan 13;18(1):2. PMID: 29332202.

Christie AE, Roncalli V, Cieslak MC, Pascual MG, Yu A,  Lameyer TJ*, Stanhope ME, Dickinson PS. Prediction of a neuropeptidome for the eyestalk ganglia of the lobster Homarus americanus using a tissue-specific de novo assembled transcriptome.  Gen Comp Endocrinol. 2017; 243:96-119. PMID: 27823957

Clifford AM, Weinrauch AM, Edwards SL, Wilkie MP, Goss GG. Flexible ammonia handling strategies using both cutaneous and branchial epithelia in the highly ammonia-tolerant Pacific hagfish. Am J Physiol Regul Integr Comp Physiol. 2017 Aug 1;313(2):R78-R90. PMID: 28515081. PMCID: PMC5582951.

Cuomo CA, Shea T, Yang B, Rao R, Forche A. Whole Genome Sequence of the Heterozygous Clinical Isolate Candida krusei 81-B-5. G3 (Bethesda). 2017 Sep 7;7(9):2883-2889. doi: 10.1534/g3.117.043547. PubMed PMID: 28696923; PubMed Central PMCID: PMC5592916

Dearborn DC, Page SM, Dainson M, Hauber ME, Hanley D. Eggshells as hosts of bacterial communities: an experimental test of the antimicrobial egg coloration hypothesis.  Ecol Evol. 2017 Oct 16;7(22):9711-9719. PMID:29188002. PMCID: PMC5696418.

Dickinson PS, Armstrong MK, Dickinson ES, Fernandez R, Miller A, Pong S, Powers B, Pupo Wiss A, Stanhope ME, Walsh PJ, Wiwatpanit T, Christie AE. Three members of a peptide family are differentially distributed and elicit differential state-dependent responses in a pattern generator-effector system. Journal of neurophysiology. 2018 January 31. PubMed PMID: 29384453.

Dedrick RM, Jacobs-Sera D, Bustamante CA, Garlena RA, Mavrich TN, Pope WH, Reyes JC, Russell DA, Adair T, Alvey R, Bonilla JA, Bricker JS, Brown BR, Byrnes D, Cresawn SG, Davis WB, Dickson LA, Edgington NP, Findley AM, Golebiewska U, Grose JH, Hayes CF, Hughes LE, Hutchison KW, Isern S, Johnson AA, Kenna MA, Klyczek KK, Mageeney CM, Michael SF, Molloy SD, Montgomery MT, Neitzel J, Page ST, Pizzorno MC, Poxleitner MK, Rinehart CA, Robinson CJ, Rubin MR, Teyim JN, Vazquez E, Ware VC, Washington J, Hatfull GF. Prophage-mediated defence against viral attack and viral counter-defence. Nature microbiology. 2017 January 9;2:16251. PubMed PMID: 28067906; PubMed Central PMCID: PMC5508108.

Duke CG, Kennedy AJ, Gavin CF, Day JJ, Sweatt JD. “Experience-dependent epigenomic reorganization in the hippocampus.” Learning and Memory. 2017. Jun 15;24(7):278-288. doi: 10.1101/lm.045112.117. PMID: 28620075 PMCID: PMC5473107.

Duong M, Yu X, Teng B, Schroder P, Haller H, Eschenburg S, Schiffer M. Protein kinase C ϵ stabilizes β-catenin and regulates its subcellular localization in podocytes. J Biol Chem. 2017 Jul 21;292(29):12100-12110. PMID: 28539358. PMCID: PMC5519362.

DuShane JK*, Wilczek MP*, Mayberry CL*, Maginnis MS*. MAPK ERK is a Critical Regulator of JCPyV Infection. Journal of Virology. PMID:29321332.DOI:10.1128/JVI.01529-17 INBRE cited.

Godwin JW*, Debuque R, Salimova E, Rosenthal NA. Heart regeneration in the salamander relies on macrophage-mediated control of fibroblast activation and the extracellular landscape. NPJ Regen Med. 2017;2. pii: 22. PMID: 29201433. PMCID: PMC5677961.

Gould, TJ*, K. Toth, N. Mucke, J. Langowski, A. Hakusui, A. L. Olins, and D. E. Olins. (2017) “Defining the Epichromatin Epitope,” Nucleus, [Epub ahead of print]. PMID: 28960120.

Hahn ME, Karchner SI, Merson RR. Diversity as Opportunity: Insights from 600 Million Years of AHR Evolution. Current opinion in toxicology. 2017 February;2:58-71. PubMed PMID: 28286876; PubMed Central PMCID: PMC5343764.

Hanauer DI, Graham MJ, Betancur L, Bobrownicki A, Cresawn SG, Garlena RA, Jacobs-Sera D, Kaufmann N, Pope WH, Russell DA, Jacobs WR Jr, Sivanathan V, Asai DJ, Hatfull GF. An inclusive Research Education Community (iREC): Impact of the SEA-PHAGES program on research outcomes and student learning. Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):13531-13536. PMID: 29208718. PMCID: PMC5754813.

Herren, C et al.  Genome sequences of four subcluster L2 Mycobacterium phages, Finemlucis, Miley16, WIlder, and Zakai.  Genome Announcements 2017 Nov 16;5(46)1-2.  PMID 29146853. PMCID:  PMC5690330.

Ianov L, De Both M, Chawla M, Rani A, Kennedy AJ, Piraz I, Day JJ, Siniard A, Kumar A, Sweatt JD, Barnes CA, Huentelman MJ, Foster TC. “Hippocampal transcriptomic profiles: Subfield vulnerability to age and cognitive impairment.” Frontiers in Aging Neuroscience. 2017. PMID:29276487. PMCID: PMC5727020.

King BL*, Yin VP. Prioritizing studies on regeneration in nontraditional model organisms. Regen Med. 2017 Jan;12(1):1-3. doi: 10.2217/rme-2016-0159. Epub 2016 Dec 7. PubMed PMID: 27925505.

Lisse TS, Rieger S*. IKKα regulates human keratinocyte migration through surveillance of the redox environment. J Cell Sci. 2017 Mar 1;130(5):975-988. PMID: 28122935. PMCID: PMC5358334.

Mayberry CL, Nelson CDS, Maginnis MS. JC Polyomavirus Attachment and Entry: Potential Sites for PML Therapeutics. Current clinical microbiology reports. 2017 September;4(3):132-141. PubMed PMID: 28989857; PubMed Central PMCID: PMC5629017.

McBride AE*. Messenger RNA transport in the opportunistic fungal pathogen Candida albicans. Curr Genet. 2017 Dec;63(6):989-995. PMID:28512683. PMCID: PMC5669823.

Müller-Deile J, Dannenberg J, Schroder P, Lin MH, Miner JH, Chen R, Bräsen JH, Thum T, Nyström J, Staggs LB, Haller H, Fiedler J, Lorenzen JM, Schiffer M. Podocytes regulate the glomerular basement membrane protein nephronectin by means of miR-378a-3p in glomerular diseases. Kidney Int. 2017 Oct;92(4):836-849. PMID: 28476557. PMCID: PMC5658661.

Nickerson CA*, Brown AL*, Yu W*, Chun Y*, Glenn MJ*. Prenatal choline supplementation attenuates MK-801-induced deficits in memory, motor function, and hippocampal plasticity in adult male rats. Neuroscience. INBRE cited. PMCID: PMC5605469.

Peck RF*, Plesa AM*, Graham SM*, Angelini DR, Shaw EM*. Opsin-mediated Inhibition of bacterioruberin synthesis in halophilic archaea. Journal of Bacteriology 2017 Nov; 199: e00303-17. PMID: 28784816. PMCID: PMC5626960.

Pennacchietti, F, T. J. Gould*, and S. T. Hess. (2017) “The Role of Probe Photophysics in Localization-Based Superresolution Microscopy.” Biophysical Journal, 113:2037-2054.PMID: 29117527. PMCID: PMC5686043.

Reid NM, Jackson CE, Gilbert D, Minx P, Montague MJ, Hampton TH, Helfrich LW, *King BL, Nacci DE, Aluru N, Karchner SI, Colbourne JK, Hahn ME, Shaw JR, Oleksiak MF, Crawford DL, Warren WC, Whitehead A. The landscape of extreme genomic variation in the highly adaptable Atlantic killifish. Genome Biol Evol. 2017 Feb 13. doi: 10.1093/gbe/evx023. PubMed PMID: 28201664; PubMed Central PMCID: PMC5381573.

Rochester JD, Tanner PC, Sharp CS, Andralojc KM, Updike DL. PQN-75 is expressed in the pharyngeal gland cells of Caenorhabditiselegans and is dispensable for germline development. Biol Open. 2017 Sep 15;6(9):1355-1363. PMID: 28916707. PMCID: PMC5612245.

Sant KE, Hansen JM, Williams LM, Tran NL, Goldstone JV, Stegeman JJ, Hahn ME, Timme-Laragy A. The role of Nrf1 and Nrf2 in the regulation of glutathione and redox dynamics in the developing embryos. Redox Biology 2017 13: 207-218. PMID: 28582729. PMCID: PMC5458767.

Simmons WR* and Angelini DR*. Chronic Environmental Exposure to a Neonicotinoid Increases Expression of Antimicrobial Peptide Genes in Bombus impatiens. Scientific Reports 7:44773. INBRE cited.  PMCID# PMC5359568.

Smith AM, Maguire-Nguyen KK, Rando TA, Zasloff MA, Strange KB, Yin VP. The protein tyrosine phosphatase 1B inhibitor MSI-1436 stimulates regeneration of heart and multiple other tissues. NPJ Regen Med. 2017 Mar 3;2:4. PMID: 29302341. PMCID: PMC5677970.

Stefanelli, Gilda, Amber B. Azam, Brandon J. Walters, Mark A. Brimble, Caroline P. Gettens, Pascale Bouchard-Cannon, Hai-Ying M. Cheng, Andrew M. Davidoff, Klotilda Narkaj, Jeremy J. Day, Andrew J. Kennedy*, and Iva B. Zovkic*. Learning and age-related changes in genome-wide H2A.Z binding in the mouse hippocampus. Cell Reports. 2018, PMID: 29386101

Sullivan* C., C Lage, J Yoder, J Postlethwait, C Kim.  2017.  Evolutionary divergence of the vertebrate TNFAIP8 gene family: Applying the spotted gar orthology bridge to understand ohnolog loss in teleosts. PLOS One 12(6):e0179517. PMID: 28658311. PMCID:  PMC5489176.

Waldron AL, Schroder PA, Bourgon KL, Bolduc JK, Miller JL, Pellegrini AD, Dubois AL, Blaszkiewicz M, Townsend KL, Rieger S. Oxidative stress-dependent MMP-13 activity underlies glucose neurotoxicity. Journal of diabetes and its complications. 2017 December 6. PubMed PMID: 29306589.

Wirth P*, Yu W*, Kimball AL, Liao J*, Berkner P, Glenn MJ*. New method to induce mild traumatic brain injury in rodents produces differential outcomes in female and male Sprague Dawley rats. Journal of Neuroscience Methods. 2017 October 1;290:133-144. PubMed PMID: 28780369.

Yue S,  Wadia V*, Sekula N, Dickinson PS, Thompson RR. Acute effects of sex steroids on visual processing in male goldfish. J Comp Physiol A Neuroethol Sens Neural Behav Physiol. 2017 Oct 28. doi: 10.1007/s00359-017-1220-6. PMID: 29080952.

Zhu S, Coffman JA. Simple and fast quantification of DNA damage by real-time PCR, and its application to nuclear and mitochondrial DNA from multiple tissues of aging zebrafish. BMC research notes. 2017 July 11;10(1):269. PubMed PMID: 28693618; PubMed Central PMCID: PMC5504608.

Horch, HW* (edited by). Cricket as a Model Organism:  Development, Regeneration, and Behavior.  Edited by Hadley Wilson Horch, Taro Mito, Aleksandar Popadic, Hideyo Ohuchi, Sumihare Noji.  Springer (New York, Heidelberg).2017.

Horch, HW*,  Liu, J., Mito, T., Popaidc, A., and Watanabe, T.  Protocols in the Cricket. 2017. In: Cricket as a Model Organism: Development, Regeneration, and Behavior. Pp 327-370. Edited by Hadley Wilson Horch, Taro Mito, Aleksandar Popadic, Hideyo Ohuchi, Sumihare Noji. Springer (New York, Heidelberg).

Horch, HW*,  Pfister A., Ellers, O., Johnson, A.S. Plasticity in the cricket central nervous system. 2017.  In: Cricket as a Model Organism:  Development, Regeneration, and Behavior. pp 105-128. Edited by Hadley Wilson Horch, Taro Mito, Aleksandar Popadic, Hideyo Ohuchi, Sumihare Noji.  Springer (New York, Heidelberg). 2017.

Yin V.P. In Situ Detection of MicroRNA Expression with RNAscope Probes. In: Gaspar I. (eds) RNA Detection. Methods in Molecular Biology, vol 1649. (2018) Humana Press, New York, NY.

Godwin, J*.  Controlling both the constructive and destructive power of inflammation to promote repair and regeneration. Book chapter in Regenerative Engineering and Developmental Biology: Principles and Applications. Edited By David M. Gardiner, 1st Edition. Published 12 September 2017, Pub. location Boca Raton. Imprint CRC Press, Pages 646 pages. eBook ISBN 9781498723329.

Godwin JW, Pinto AR, Rosenthal NA.  Chasing the recipe for a pro-regenerative immune system.  Semin Cell Dev Biol. 2017 Jan;61:71- 79. doi: 10.1016/j.semcdb.2016.08.008. Epub 2016 Aug 10.  Review.  PMID: 27521522; PMCID: PMC5338634.

Duong M, Yu X, Teng B, Schroder P, Haller H, Eschenburg S, Schiffer M. Protein kinase C ϵ stabilizes β-catenin and regulates its subcellular localization in podocytes.  J Biol Chem. 2017 Jul 21;292(29):12100-12110. doi: 10.1074/jbc.M117.775700. Epub 2017 May 24.  PMID: 28539358.

Müller-Deile J, Dannenberg J, Schroder P, Lin MH, Miner JH, Chen R, Bräsen JH, Thum T, Nyström J, Staggs LB, Haller H, Fiedler J, Lorenzen JM, Schiffer M. Podocytes regulate the glomerular basement membrane protein nephronectin by means of miR-378a-3p in glomerular diseases.    Kidney Int. 2017 May 3. PMID: 28476557.

Rollins JA, Howard AC, Dobbins SK, Washburn EH, Rogers AN.  Assessing health span in Caenorhabditis elegans: lessons from short-lived mutants. J Gerontol A Biol Sci Med Sci. 2017 Apr 1;72(4):473-480. doi: 10.1093/gerona/glw248.  PMID: 28158466.

Schenk H, Müller-Deile J, Kinast M, Schiffer M.  Disease modeling in genetic kidney diseases: zebrafish.  Cell Tissue Res. 2017 Jul;369(1):127-141. doi: 10.1007/s00441-017-2593-0. Epub 2017 Mar 22.  PMID: 28331970.

Waldron AL, Schroder PA, Bourgon KL, Bolduc JK, Miller JL, Pellegrini AD, Dubois AL, Blaszkiewicz M, Townsend KL, Rieger S*. Oxidative stress-dependent MMP-13 activity underlies glucose neurotoxicity. J Diabetes Complications. PMID: 29306589.

2017

Andralojc KM, Campbell AC, Kelly AL, Terrey M*, Tanner PC, Gans IM, Senter-Zapata MJ, Khokhar ES, Updike DL. ELLI-1, a novel germline protein, modulates RNAi activity and P-granule accumulation in Caenorhabditis elegans. PLoS Genet. 2017 Feb 9;13(2): e1006611. PMID: 28182654. PMCID: PMC5325599.

Ariyachet C*, Beißel C, Li X*, Lorrey S*, Mackenzie O*, Martin PM*, O’Brien K*, Pholcharee T*, Sim S*, Krebber H, McBride AE†. Post-translational modification directs nuclear and hyphal tip localization of Candida albicans mRNA-binding protein Slr1. Mol Microbiol. 2017 May;104(3):499-519. PMID: 28187496. m: PMC5405739.

Breton TS†, Nettleton JC, O’Connell B*, Bertocci M*. Fine-scale population genetic structure of sugar kelp, Saccharina latissima (Laminariales, Phaeophyceae), in eastern Maine, USA. Phycologia 2017 Nov; 57 32-40. PMID: 29170569 PMCID: PMC5695712.

Carmody M, Notarianni TP*, Sambel LA*, Walsh SJ*, Burke JM, Armstrong JL*, Lawson TG. E6AP/UBE3A catalyzes encephalomyocarditis virus 3C protease polyubiquitylation and promotes its concentration reduction in virus-infected cells. Biochem Biophys Res Commun. 2017 Dec 9;494(1-2):63-69. PMID: 29054411. PMCID: PMC5675005.

Christie AE, Roncalli V, Cieslak MC*, Pascual MG*, Yu A*, Lameyer TJ*, Stanhope ME*, Dickinson PS. Prediction of a neuropeptidome for the eyestalk ganglia of the lobster Homarus americanus using a tissue-specific de novo assembled transcriptome.  Gen Comp Endocrinol. 2017; 243:96-119. PMID: 27823957. PMCID: PMC5796769.

Clifford AM, Weinrauch AM, Edwards SL, Wilkie MP, Goss GG. Flexible ammonia handling strategies using both cutaneous and branchial epithelia in the highly ammonia-tolerant Pacific hagfish. Am J Physiol Regul Integr Comp Physiol. 2017 Aug 1;313(2): R78-R90. PMID: 28515081. PMCID: PMC5582951.

Cuomo CA, Shea T, Yang B, Rao R, Forche A. Whole Genome Sequence of the HeterozygousClinical Isolate Candida krusei 81-B-5. G3 (Bethesda). 2017 Sep 7;7(9):2883-2889. PMID: 28696923. PMCID: PMC5592916.

Davis AP, Grondin CJ, Johnson RJ, Sciaky D, King BL, McMorran R, Wiegers J, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database: update 2017. Nucleic Acids Res. 2017 Jan 4;45(D1):D972-D978. doi: 10.1093/nar/gkw838. PMID: 27651457. PMCID: PMC5210612.

Dearborn DC, Page SM*, Dainson M*, Hauber ME, Hanley D. Eggshells as hosts of bacterial communities: an experimental test of the antimicrobial egg coloration hypothesis.  Ecol Evol. 2017 Oct 16;7(22):9711-9719. PMID:29188002. PMCID: PMC5696418.

Dedrick RM, Jacobs-Sera D, Bustamante CA, Garlena RA, Mavrich TN, Pope WH, Reyes JC, Russell DA, Adair T, Alvey R, Bonilla JA, Bricker JS, Brown BR, Byrnes D, Cresawn SG, Davis WB, Dickson LA, Edgington NP, Findley AM, Golebiewska U, Grose JH, Hayes CF, Hughes LE, Hutchison KW, Isern S, Johnson AA, Kenna MA, Klyczek KK, Mageeney CM, Michael SF, Molloy SD, Montgomery MT, Neitzel J, Page ST, Pizzorno MC, Poxleitner MK, Rinehart CA, Robinson CJ, Rubin MR, Teyim JN, Vazquez E, Ware VC, Washington J, Hatfull GF. Prophage-mediated defence against viral attack and viral counter-defence. Nat Microbiol. 2017 Jan 9;2:16251. Article number: 16251. doi: 10.1038/nmicrobiol.2016.251. PMID: 28067906. PMCID: PMC5508108.

Duke CG, Kennedy AJ†, Gavin CF, Day JJ, Sweatt JD. Experience-dependent epigenomic reorganization in the hippocampus. Learning and Memory. 2017. Jun 15;24(7):278-288. PMID: 28620075 PMCID: PMC5473107.

Duong M, Yu X, Teng B, Schroder P, Haller H, Eschenburg S, Schiffer M. Protein kinase C ϵ stabilizes β-catenin and regulates its subcellular localization in podocytes. J Biol Chem. 2017 Jul 21;292(29):12100-12110. PMID: 28539358. PMCID: PMC5519362.

DuShane JK*, Wilczek MP*, Mayberry CL*, Maginnis MS†. MAPK ERK is a Critical Regulator of JCPyV Infection. Journal of Virology. PMID: 29321332.

Godwin JW†, Debuque R, Salimova E, Rosenthal NA. Heart regeneration in the salamander relies on macrophage-mediated control of fibroblast activation and the extracellular landscape. NPJ Regen Med. 2017;2. pii: 22. PMID: 29201433. PMCID: PMC5677961.

Gould, TJ†, K. Toth, N. Mucke, J. Langowski, A. Hakusui*, A. L. Olins, and D. E. Olins. (2017) Defining the Epichromatin Epitope, Nucleus, [Epub ahead of print]. PMID: 28960120. PMCID in progress.

Hahn ME, Karchner SI, Merson RR. Diversity as Opportunity: Insights from 600 Million Years of AHR Evolution. Current opinion in toxicology. 2017 February; 2:58-71. PMID: 28286876; PMCID: PMC5343764.

Hanauer DI, Graham MJ, Betancur L, Bobrownicki A, Cresawn SG, Garlena RA, Jacobs-Sera D, Kaufmann N, Pope WH, Russell DA, Jacobs WR Jr, Sivanathan V, Asai DJ, Hatfull GF. An inclusive Research Education Community (iREC): Impact of the SEA-PHAGES program on research outcomes and student learning. Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):13531-13536. PMID: 29208718. PMCID: PMC5754813.

Herren, C et al.  Genome sequences of four subcluster L2 Mycobacterium phages, Finemlucis, Miley16, WIlder, and Zakai.  Genome Announcements 2017 Nov 16;5(46)1-2.  PMID: 29146853. PMCID: PMC5690330.

Ianov L, De Both M, Chawla M, Rani A, Kennedy AJ†, Piraz I, Day JJ, Siniard A, Kumar A, Sweatt JD, Barnes CA, Huentelman MJ, Foster TC. Hippocampal transcriptomic profiles: Subfield vulnerability to age and cognitive impairment. Frontiers in Aging Neuroscience. 2017. PMID: 29276487. PMCID: PMC5727020.

King BL, Yin VP. Prioritizing studies on regeneration in nontraditional model organisms. Regen Med. 2017 Jan;12(1):1-3. doi: 10.2217/rme-2016-0159. Epub 2016 Dec 7. PMID: 27925505.

Lisse TS, Rieger S. IKKα regulates human keratinocyte migration through surveillance of the redox environment. J Cell Sci. 2017 Mar 1;130(5):975-988. PMID: 28122935. PMCID: PMC5358334.

Mangiamele, LL, Gomez, JR*, Curtis, NL, Thompson, RR. GPER/GPR30, a membrane estrogen receptor, is expressed in brain and retina of a social fish (Carassius auratus) and co-localizes with isotocin. Journal of Comparative Neurology. 2017 Feb 1;525(2):252-270. PMID: 27283982. PMCID: PMC5138143.

Mayberry CL, Nelson CDS, Maginnis MS†. JC Polyomavirus Attachment and Entry: Potential Sites for PML Therapeutics. Current clinical microbiology reports. 2017 September;4(3):132-141. PMID: 28989857. PMCID: PMC5629017.

McBride AE†. Messenger RNA transport in the opportunistic fungal pathogen Candida albicans. Curr Genet. 2017 Dec;63(6):989-995. PMID: 28512683. PMCID: PMC5669823.

Müller-Deile J, Dannenberg J, Schroder P, Lin MH, Miner JH, Chen R, Bräsen JH, Thum T, Nyström J, Staggs LB, Haller H, Fiedler J, Lorenzen JM, Schiffer M. Podocytes regulate the glomerular basement membrane protein nephronectin by means of miR-378a-3p in glomerular diseases. Kidney Int. 2017 Oct;92(4):836-849. PMID: 28476557. PMCID: PMC5658661.

Nickerson CA*, Brown AL*, Yu W*, Chun Y*, Glenn MJ†. Prenatal choline supplementation attenuates MK-801-induced deficits in memory, motor function, and hippocampal plasticity in adult male rats. Neuroscience. PMCID: PMC5605469.

Peck RF†, Plesa AM*, Graham SM*, Angelini DR, Shaw EM*. Opsin-mediated Inhibition of bacterioruberin synthesis in halophilic archaea. Journal of Bacteriology 2017 Nov; 199: e00303-17. PMID: 28784816. PMCID: PMC5626960.

Pennacchietti, F, T.J. Gould†, and S. T. Hess. (2017) The Role of Probe Photophysics in Localization-Based Superresolution Microscopy. Biophysical Journal, 113:2037-2054. PMID: 29117527. PMCID: PMC5686043. PMCID: PMC5489176.

Reid NM, Jackson CE, Gilbert D, Minx P, Montague MJ, Hampton TH, Helfrich LW, King BL, Nacci DE, Aluru N, Karchner SI, Colbourne JK, Hahn ME, Shaw JR, Oleksiak MF, Crawford DL, Warren WC, Whitehead A. The landscape of extreme genomic variation in the highly adaptable Atlantic killifish. Genome Biol Evol. 2017 Feb 13. PMID: 28201664. PMCID: PMC5381573.

Rochester JD, Tanner PC, Sharp CS, Andralojc KM, Updike DL. PQN-75 is expressed in the pharyngeal gland cells of Caenorhabditiselegans and is dispensable for germline development. Biol Open. 2017 Sep 15;6(9):1355-1363. PMID: 28916707. PMCID: PMC5612245.

Rollins JA, Howard AC, Dobbins SK, Washburn EH*, Rogers AN. Assessing health span in Caenorhabditis elegans: lessons from short-lived mutants. J Gerontol A Biol Sci Med Sci. 2017 Apr 1;72(4):473-480. doi: 10.1093/gerona/glw248. PMID: 28158466.

Sant KE, Hansen JM, Williams LM†, Tran NL, Goldstone JV, Stegeman JJ, Hahn ME, Timme-Laragy A. The role of Nrf1 and Nrf2 in the regulation of glutathione and redox dynamics in the developing embryos. Redox Biology 2017 13: 207218. PMID: 28582729. PMCID: PMC5458767.

Schenk H, Müller-Deile J, Kinast M, Schiffer M. Disease modeling in genetic kidney diseases: zebrafish. Cell Tissue Res. 2017 Jul;369(1):127-141. doi: 10.1007/s00441-017-2593-0. Epub 2017 Mar 22. PMID: 28331970.

Simmons WR* and Angelini DR. Chronic Environmental Exposure to a Neonicotinoid Increases Expression of Antimicrobial Peptide Genes in Bombus impatiens. Scientific Reports 7:44773. PMCID: PMC5359568.

Smith AM, Maguire-Nguyen KK, Rando TA, Zasloff MA, Strange KB, Yin VP. The protein tyrosine phosphatase 1B inhibitor MSI-1436 stimulates regeneration of heart and multiple other tissues. NPJ Regen Med. 2017 Mar 3;2:4. PMID: 29302341. PMCID: PMC5677970.

Sullivan C†, C Lage, J Yoder, J Postlethwait, C Kim. 2017. Evolutionary divergence of the vertebrate TNFAIP8 gene family: Applying the spotted gar orthology bridge to understand ohnolog loss in teleosts. PLOS One 12(6):e0179517. PMID: 28658311. PMCID: PMC5489176.

Waldron AL, Schroder PA, Bourgon KL*, Bolduc JK, Miller JL, Pellegrini AD, Dubois AL, Blaszkiewicz M, Townsend KL, Rieger S*. Oxidative stress-dependent MMP-13 activity underlies glucose neurotoxicity. J Diabetes Complications. PMID: 29306589. PMCID: PMC5820202.

Wirth P*, Yu W*, Kimball AL, Liao J*, Berkner P, Glenn MJ†. New method to induce mild traumatic brain injury in rodents produces differential outcomes in female and male Sprague Dawley rats. Journal of Neuroscience Methods. 2017 October 1;290:133-144. PMID: 28780369. PMCID: PMC5790318.

Yue S*, Wadia V*, Sekula N*, Dickinson PS, Thompson RR. Acute effects of sex steroids on visual processing in male goldfish. J Comp Physiol A Neuroethol Sens Neural Behav Physiol. 2017 Oct 28. PMID: 29080952. PMCID: PMC5818146.

Zhu S, Coffman JA. Simple and fast quantification of DNA damage by real-time PCR, and its application to nuclear and mitochondrial DNA from multiple tissues of aging zebrafish. BMC research notes. 2017 July 11;10(1):269. PMID: 28693618; PMCID: PMC5504608.

2016

Bavis RW, Li KY, DeAngelis KJ, March RJ*, Wallace JA, Logan S*, Putnam RW. Ventilatory and chemoreceptor responses to hypercapnia in neonatal rats chronically exposed to moderate hyperoxia. Respir Physiol Neurobiol. 2016 Dec 26;237:22-34. PMID: 28034711. PMCID: PMC5272815.

Blick AJ, Mayer-Hirshfeld I*, Malibiran BR, Cooper MA*, Martino PA, Johnson JE, Bateman JR. The capacity to act in trans varies among Drosophila enhancers. Genetics. 2016 May; 203(1):203-18. PMID: 26984057; PMCID: PMC4858774.

Bodnar A, Coffman JA. Maintenance of somatic tissue regeneration with age in short- and long-lived species of sea urchins. Aging Cell 2016 Aug;15(4): 778-87. PMID: 27095483. PMCID: 4933669.

Clark EL*, Emmadi M, Krupp KL*, Podilapu AR, Helble JD*, Kulkarni SS, Dube DH†, Development of rare bacterial monosaccharide analogs for metabolic glycan labeling in pathogenic bacteria, ACS Chemical Biology 2016 Dec 16;11(12):3365-3373. PMID: 27766829. PMCID: PMCID: PMC5161589.

Davis AP, Wiegers TC, King BL, Wiegers J, Grondin CJ, Sciaky D, Johnson RJ, Mattingly CJ. Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparative Toxicogenomics Database. PLoS One. 2016 May 12;11(5):e0155530. PMID: 27171405; PMCID: PMC4865041.

Dearborn DC, Gager AB, McArthur AG, Gilmour ME, Mandzhukova E*, Mauck RA.  Gene duplication and divergence produce diverse MHC genotypes without disassortative mating.  Molecular Ecology 2016; 25: 4355-4367. PMID: 27376487. PMCID: PMC5021581.

Dickinson, ES*, AS Johnson, O Ellers, PS Dickinson. Forces generated during stretch in the heart of the lobster Homarus americanus are anisotropic and are altered by neuromodulators. J Exp Biol. 2016; 219:1187-202. PMID: 26896540. PMCID: PMC4852687.

Dimitriadi M, Derdowski A, Kalloo G, Maginnis MS†, Bliska B, O’ Hern P, Nguyen KCQ, Cook SJ, Poulogiannis G, Atwood WJ, Hall DH, Hart AC. Decreased Function of Survival Motor Neuron Protein Impairs Endocytic Pathways. PNAS 2016 July;113(30):E4377-86. PMID: 27402754. PMCID: PMC4968725.

Grondin CJ, Davis AP, Wiegers TC, King BL, Wiegers JA, Reif DM, Hoppin JA, Mattingly CJ. Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database. Environ Health Perspect. 2016 Oct;124(10):1592-1599. PMID: 27170236. PMCID: PMC5047769.

Hartig EI, Zhu S, King BL, Coffman JA. Cortisol-treated zebrafish embryos develop into pro-inflammatory adults with aberrant immune gene regulation. Biol Open. 2016 Aug 15;5(8):1134-41. doi: 10.1242/bio.020065. PMID: 27444789; PMCID: PMC5004618.

Hopke A*, Nicke N, Hidu EE*, Degani G, Popolo L, Wheeler RT†. Neutrophil Attack Triggers Extracellular Trap-Dependent Candida Cell Wall Remodeling and Altered Immune Recognition. PLoS Pathog. 2016 May 25;12(5):e1005644. doi: 10.1371/journal.ppat.1005644. PMID: 27223610. PMCID: PMC4880299.

Howard AC, Rollins J, Snow S, Castor S*, Rogers AN. Reducing translation through eIF4G/IFG-1 improves survial under ER stress that depends on heat shock factor HSF-1 in Caenorhabditis elegans. Aging Cell 2016 Dec; 15(6): 1027-1038. PMID: 27538368. PMCID: PMC5114698.

King BL, Shi LF, Kao P, Clusin WT. Calcium activated K⁺ channels in the electroreceptor of the skate confirmed by cloning. Details of subunits and splicing. Gene. 2016 March 1;578(1):63-73. PMID: 26687710. PMCID: PMC4724458.

King BL, Yin VP. A conserved microRNAs regulatory circuit is differentially controlled during limb/appendage regeneration. PLoS One. 2016 Jun 29;11(6):e0157106. PMID: 27355827. PMCID: PMC4927183.

Kohorn BD, Hoon D, Minkoff BB, Sussman MR, Kohorn SL. Rapid oligo-galacturonide induced changes in protein phosphorylation in Arabidopsis. Mol Cell Proteomics. 2016 Apr;15(4):1351-9. PMID: 26811356. PMCID: PMC4824860.

Korstanje R, Deutsch K, Bolanos-Palmieri P, Hanke N, Schroder P, Staggs L, Bräsen JH, Roberts IS, Sheehan S, Savage H, Haller H, Schiffer M. Loss of kynurenine 3-mono-oxygenase causes proteinuria. J Am Soc Nephrol 2016 Nov; 27(11): 3271-3277. PMID: 27020856. PMCID: PMC5084883.

Lee EC, Kim H, Ditano J*, Manion D*, King BL, Strange K. Abnormal osmotic avoidance behavior in C. elegans is associated with increased hypertonic stress resistance and improved proteostasis. PLoS One. 2016 Apr 25;11(4):e0154156. PMID: 27111894. PMCID: PMC4844114.

Liao J*, Seggio JA, Ahmad ST†. Mutations in the circadian gene period alter behavioral and biochemical responses to ethanol in Drosophila. Behavioural Brain Research 2016 April 1; 302:213-9. PMID: 26802726 PMCID: PMC4769108.

Lisse TS, King BL, Rieger S. Comparative transcriptomic profiling of hydrogen peroxide signaling networks in zebrafish and human keratinocytes: Implications toward conservation, migration and wound healing. Sci Rep. 2016 Feb 5;6:20328. PMID: 26846883. PMCID: PMC4742856.

Lisse TS, Middleton LJ, Pellegrini AD, Martin PB, Spaulding EL, Lopes O*, Brochu EA, Carter EV, Waldron A, Rieger S. Paclitaxel-inducted epithelial damange and ectopic MMP-13 expression promotes neurotoxicity in zebrafish. Proc Natl Acad Sci USA. 2016 Apr 12;113(15):E2189-98. PMID: 27035978. PMCID: PMC4839466.

Logan S*, Tobin KE*, Fallon SC*, Deng KS, McDonough AB, Bavis RW. Chronic intermittent hyperoxia alters the development of the hypoxic ventilatory response in neonatal rats. Respiratory physiology & neurobiology. 2016 January;220:69-80. PMID: 26444750. PMCID: PMC4688092.

Mills ML*, Bragg J, Bruce A*, Dehn A*, Drouin J, Hefner M*, Katon D, McHugh D*, Zeba F, Bowman CA, Cresawn SG, Jacobs-Sera D, Russell DA, Pope WH, Hatfull GF, Dunbar DA, Zegers GP†, Page ST, Genome Sequences of Newly Isolated Mycobacteriophages Forming Cluster S Genome Announcements September/October 2016 Volume 4 Issue 5, PMC5043550.

Palopoli MF, Tra V*, Matoin K*, Mac PD*. 2016. Evolution of host range in the follicle mite Demodex kutzeri. Parasitology 2016 Nov 29:1-7. [Epub ahead of print]. PMID: 27894366.

Rizzo F, Coffman JA, Arnone MI. An Elk transcription factor is required for Runx-dependent survival signaling in the sea urchin embryo. Developmental biology. 2016 August 1;416(1):173-86. PMID: 27235147. PMC4961547.

Shim J*, Kennedy RH, Weatherly LM, Hutchinson LM, Pelletier JH*, Hashmi HN*, Blais K, Velez A*, Gosse JA. Arsenic inhibits mast cell degranulation via suppression of early tyrosine phosphorylation events. Journal of applied toxicology: JAT. 2016 November;36(11):1446-59. PMID: 27018130. PMCID: PMC5040607.

Soto I, Grabowska WA*, Onos KD, Graham LC, Jackson HM, Simeone SN, Howell GR. Meox2 haploinsufficiency increases neuronal cell loss in a mouse model of Alzheimer’s disease. Neurobiology of Aging 2016. June: 42:50-60. PMCID: PMC4878023.

Soundararajan R, Stearns TM, Czachor A, Fukumoto J, Turn C, Westermann-Clark E, Breitzig M, Tan L, Lockey RF, King BL, Kolliputi N. Global gene profiling of aging lungs in Atp8b1 mutant mice. Aging (Albany NY). 2016 Sep 29;8(9):2232-2252. doi: 10.18632/aging.101056. PMID: 27689529. PMCID: PMC5076460.

Tarver JE, Dos `Reis M, Mirarab S, Moran RJ, Parker S, O’Reilly JE, King BL, O’Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D. The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference. Genome Biol Evol. 2016 Jan 5;8(2):330-44. doi: 10.1093/gbe/evv261. PMID: 26733575. PMCID: PMC4779606.

Teng B, Schroder P, Müller-Deile J, Schenk H, Staggs L, Tossidou I, Dikic I, Haller H, Schiffer M. CIN85 deficiency prevents nephrin endocytosis and proteinuria in diabetes. Diabetes 2016 Dec;65(12): 3667-3679. PMID: 27531950. PMCID: PMC5314701.

Williams LM†, Lago B*, McArthur AG*, Raphenya AR, Pray N*, Saleem N*, Salas S*, Paulson K*, Mangar R*, Liu Y, Vo AH, Shavit J. The transcription factor, Nuclear factor, erythroid 2 (Nfe2), is a regulator of the oxidative stress response during Danio rerio development. Aquatic Toxicology 2016 Nov; 180: 141-154. PMID: 27716579. PMCID: PMC5274700.

Wilson JJ*, Grendler J*, Dunlap-Smith A*, Beal BF, and Page ST, Analysis of Gene Expression in an Inbred Line of Soft-Shell Clams (Mya arenaria) Displaying Growth Heterosis: Regulation of Structural Genes and the NOD2 Pathway International Journal of Genomics Volume 2016, Article ID 6720947, PMC5086354.

Yamada T, Krzeminski M, Bozoky Z, Forman-Kay JD, Strange K. Role of CBS and Bateman domains in phosphorylation-dependent regulation of a CLC anion channel. Biophys J. 2016 Nov;111(9): 1876-1886. PMID: 27806269. PMCID: 5103030.

Yamada T, Strange K. Regulatory conformational coupling between CLC anion channel membrane and cytoplasmic domains. Biophys J. 2016 Nov;111(9): 1887-1896. PMID: 27806270. PMCID: PMC5103031.

Yamada T, Wondergem R, Morrison R, Yin VP, Strange K. Leucine-rich repeat containing protein LRRC8A is essential for swelling-activated Cl- currents and embryonic development in zebrafish. Physiol Rep. 2016 Oct;4(19): phy2. 12940. PMID: 27688432. PMCID: PMC5064130.

2015

Arenas-Mena, C. and Coffman, J.A. (2015). Developmental control of transcriptional and proliferative potency during the evolution of complex multicellularity.  Dev. Dyn., 244 (10): 1193-1201.  PMCID: PMC4705838.

Bavis RW, Blegen HJ, Logan S, Fallon SC, McDonough AB. Role of TrkB during the postnatal development of the rat carotid body. Respiratory Physiology and Neurobiology 2015 Dec;219:18-24. PMID: 26222433. PMCID: PMC4639446.

Bahman Rostama, Jacqueline E. Turner, Guy T. Seavey, Christine R. Norton, Thomas Gridley, Calvin P.H. Vary, Lucy Liaw.  DLL4/Notch1 and BMP9 Interdependent Signaling Induces Human Endothelial Cell Quiescence via P27KIP1 and Thrombospondin-1.  Arteriosclerosis, Thrombosis, and Vascular Biology, 35(12):2626-37.  2015 Dec. PMCID: PMC4662626.

Campbell AC, Updike DL. CSR-1 and P granules suppress sperm-specific transcription in the C. elegans germline. Development. 2015 May 15;142(10):1745-55. PubMed PMID: 25968310; PubMed Central PMCID: PMC4440928.

Carrier, T.J., King, B.L., and Coffman, J.A.  (2015).  Gene expression changes associated with the developmental plasticity of sea urchin larvae in response to food availability.  Biol. Bull. 228: 171-180.  PMCID: PMC4706744.

Castro JB, Gould TJ. Neuro at the nanoscale: diffraction unlimited imaging with STED nanoscopy. J. Histochem Cytochem (2015) Dec; 63(12): 897-907. PMID: 26392517. PMCID: PMC4823800.

Davis AP, Grondin CJ, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, King BL, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database’s 10th year anniversary: update 2015. Nucleic Acids Res. 2015 43(Database issue):D914-20. PMID: 25326323. PMCID: PMC4384013.

Dickinson PS, Calkins A and Stevens JS. Related neuropeptides use different balances of unitary mechanisms to modulate the cardiac neuromuscular system in the American lobster, Homarus americanus.  J. Neurophysiology 2015 Feb; 113(3):856-70.  PMID: 25392168 PMCID: PMC4312872.

Dickinson PS, Sreekrishnan A, Kwiatkowski MA, Christie AE..  Distinct or shared actions of peptide family isoforms: I. Peptide-specific actions of pyrokinins in the lobster cardiac neuromuscular system. J Exp Biol. 2015 Sept; 218:2892-2904.  PMID: 26206360. PMCID: PMC4582170.

Dickinson PS, Kurland SC, Qu X, Parker BO, Sreekrishnan A, Kwiatkowski MA, Williams AH, Ysasi AB, Christie AE.. Distinct or shared actions of peptide family isoforms: II. Multiple pyrokinins exert similar effects in the lobster stomatogastric nervous system.  J Exp Biol. 2015 Sept; 218:2905-2917.  PMID: 26206359. PMCID: PMC4582171.

Farnham KR, Dube DH. A semester-long project-oriented biochemistry laboratory based on Helicobacter pylori urease. Biochemistry and Molecular Biology Education. 2015 Jul; 43: 333-340. PMID: 26173574. PMCID: PMC4573817.

Fromm B, Phillipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ. A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome. Annu Rev Genet. 2015;49:213-42. doi: 10.1146/annurev-genet-120213-092023. Review. 2015. PMID: 26473382; PMCID: PMC4743252.

Gabor KA, Charette JR, Pietraszewski MJ, Wingfield DJ, Shim JS, Millard PJ, Kim CH. ADN-mda5 transgenic zebrafish model demonstrates that Mda5 plays an important role in snakehead rhabdovirus resistance. Dev Comp Immunol. 2015 Jan 26;PubMed PMID: 25634485; NIHMSID: 658653.

Hanke N, King BL, Vaske B, Haller H, Schiffer M. A Fluorescence-Based Assay for Proteinuria Screening in Larval Zebrafish (Danio rerio). Zebrafish. 2015 12(5):372-6.  PMID: 26125680. PMCID: PMC4593894.

Jung D, Adamo MA, Lehman RM, Barnaby R, Jackson CE, Jackson BP, Shaw JR, Stanton BA. A novel variant of aquaporin 3 is expressed in killifish (Fundulus heteroclitus) intestine. Comp Biochem Physiol C Toxicol Pharmacol. 2015 May;171:1-7. PubMed PMID: 25766383; PubMed Central PMCID: PMC4402271.

Kelly AL, Senter-Zapata MJ, Campbell AC, Lust HE, Theriault ME, Andralojc KM, Updike DL. A Forward Genetic Screen for Suppressors of Somatic P Granules in Caenorhabditis elegans. G3 (Bethesda). 2015 Jun 22;5(10):2209-15. doi: 10.1534/g3.115.019257. PubMed PMID: 26100681; PubMed Central PMCID: PMC4593002.

King BL, Shi LF, Kao P, Clusin WT. Calcium activated K+ channels in the electroreceptor of the skate confirmed by cloning. Details of subunits and splicing. Gene. 2015 Dec 11. pii: S0378-1119(15)01481-X. doi: 10.1016/j.gene.2015.12.010. [Epub ahead of print] PubMed PMID: 26687710. PMCID: PMC4724458.

Kohorn BD. (2015) The state of cell wall pectin monitored by associated kinases: A model. Plant Signal Behav. 2015; 10(7):e1035854.  PMID: 26251881. PMCID: PMC4622591.

Lisse TS, Brochu EA, Rieger S. Capturing tissue repair in zebrafish larvae with time-lapse brightfield stereomicroscopy. The Journal of Visualized Experiments, J Vis Exp. 2015 Jan 31;(95). doi: 10.3791/52654. PMID: 25742070. PMCID: PMC4330669.

Palopoli MF, Peden C, Woo C, Akiha K, Ary M, Cruze L, Anderson JL, Phillips PC..  Natural and experimental evolution of sexual conflict within Caenorhabditis nematodes.   BMC Evol Biol. 2015 May;15:93. PMID: 25994934.  PMCID: PMC4455605.

Palopoli MF, Fergus DJ, Minot S, Pei DT, Simison WB, Fernandez-Silva I, Thoemmes MS, Dunn RR, Trautwein M. Global divergence of the human follicle mite Demodex folliculorum: Persistent associations between host ancestry and mite lineages. Proc Natl Acad Sci U S A 2015 Dec. PMID: 26668374. PMCID: PMC4703014.

Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR Jr, Hendrix RW, Lawrence JG, Hatfull GF, et al, SEA-PHAGE, PHIRE, Mycobacterial Genetics Course. (2015) Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of bacteriophage genetic diversity. eLife (http://dx.doi.org/10.7554/elife.06416)
 PMCID: PMC4408529.

Soundararajan R, Stearns TM, Griswold AL, Mehta A, Czachor A, Fukumoto J, Lockey RF, King BL, Kolliputi N. Detection of canonical A-to-G editing events at 3′ UTRs and microRNA target sites in human lungs using next-generation sequencing. Oncotarget. 2015 6(34):35726-36.  PMID: 26486088. PMCID: PMC4742137.

Soto, I, Graham LC, Richter HJ, Simeone SN, Radell JE, Grabowska W, Funkhouser WK, Howell MC, Howell GR. APOE Stabilization by Exercise Prevents Aging Neurovascular Dysfunction and Complement Induction. PLoS Biol. 2015 October; 13(10): e1002279. Published online 2015 October 29. doi: 10.1371/journal.pbio.1002279  PMCID: PMC4626092.

Strome S, Updike D. Specifying and protecting germ cell fate. Nat Rev Mol Cell Biol. 2015 Jul;16(7):406-16. doi: 10.1038/nrm4009. Review. PubMed PMID: 26122616. PMCID: PMC4698964.

James E. Tarver, Mario dos Reis, Siavash Mirarab, Raymond J. Moran, Sean Parker, Joseph E. O’Reilly, Benjamin L. King, Mary J. O’Connell, Robert J. Asher, Tandy Warnow, Kevin J. Peterson, Philip C.J. Donoghue and Davide Pisani; ‘The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference’ Genome Biology and Evolution. PMID: 26733575 PMCID: PMC4779606.

Weatherly LM, Shim J, Hashmi HN, Kennedy RH, Hess ST, Gosse JA. Antimicrobial Agent Triclosan is a Proton Ionophore Uncoupler of Mitochondria in Living Rat and Human Mast Cells and in Primary Human Keratinocytes. Journal of Applied Toxicology 2015 Jul 23. PMID: 26204821. PMCID: PMC4724348.

Williams LM, Nivison CL, Ambrose WG Jr, Dobbin R, Locke WL 5th. Lack of adult novel northern lineages of invasive green crab <i>Carcinus maenas</i> along much of the northern US Atlantic coast. Marine ecology progress series. 2015;532:153-159. July 21 2015. PubMed PMID: 28127110; PubMed Central PMCID: PMC5260853.

Yu JC , Fox ZD, Crimp JL, Littleford HE, Jowdry AL and Jackman WR. Hedgehog signaling regulates dental papilla formation and tooth size during zebrafish odontogenesis. Developmental Dynamics 2015 Apr; 244: 577-590.  PMID: 25645398 PMCID: PMC4380796.

2014

Ahmad ST, Steinmetz S, Bussey H, Possidente B, Seggio J. Larval ethanol exposure alters free-running circadian rhythm and per Locus transcription in adult D. melanogaster period mutants. Behavioral Brain Research 2013;241: 50-55. PMID: 23219838. PMCID: PMC3552313 [Available on 2014/3/15].

Archambault L, Linscott J, Swerdlow N, Boyland K, Riley E, ¹Schlax P. Translational efficiency of rpoS mRNA from Borrelia burgdorferi: effects of the length and sequence of the mRNA leader region. Biochem Biophys Res Commun. 2013 Mar 29;433(1):73-8. PMID: 23454119. PMCID: PMC3616328 [Available on 2014/3/29].

Howard A, Rogers AN. Role of translation initiation factor 4G in lifespan regulation and age-related health. Ageing Res Rev. 2014 Jan;13:115-24. PubMed PMID: 24394551; PubMed Central PMCID: PMC3966135.

Ji W, Yang M, Praggastis A, Li Y, Zhou HJ, He Y, Ghazvinian R, Cincotta DJ, Rice KP, Min W. Carbamoylating activity associated with the activation of the anti tumor agent laromustine inhibits angiogenesis by inducing ASK1-dependent endothelial cell death. PLoS One. 2014;9(7):e103224. PubMed PMID: 25068797; PubMed Central PMCID: PMC4113355.

Tra V, Dube D. Glycoscience: Biology and Medicine. Japan: Springer; 2014. Chemical tools to detect and target Helicobacter pylori’s glycoproteins. 479-484p. N/A: Not Journal Yin V. The Physiology of Fishes. 4th edition ed. Evans D, Claiborne J, Currie S, editors. Florida: Taylor and Francis Group; 2014. Chapter 13, Cardiac Regeneration391-404, 453p.

Fidler AL, Vanacore RM, Chetyrkin SV, Pedchenko VK, Bhave G, Yin VP, Stothers CL,Rose KL, McDonald WH, Clark TA, Borza DB, Steele RE, Ivy MT, Aspirnauts, Hudson JK, Hudson BG. A unique covalent bond in basement membrane is a primordial innovation for tissue evolution. Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):331-6. PubMed PMID: 24344311; PubMed Central PMCID: PMC3890831.

Branicky R, Miyazaki H, Strange K, Schafer WR. The voltage-gated anion channels encoded by clh-3 regulate egg laying in C elegans by modulating motor neuron excitability. J Neurosci. 2014 Jan 15;34(3):764-75. PubMed PMID: 24431435; PubMed Central PMCID: PMC3891957.

Coffman JA, Wessels A, DeSchiffart C, Rydlizky K. Oral-aboral axis specification in the sea urchin embryo, IV: hypoxia radializes embryos by preventing the initial spatialization of nodal activity. Dev Biol. 2014 Feb 15;386(2):302-7. PubMed PMID: 24384388; PubMed Central PMCID: PMC3929957.

Updike DL, Knutson AK, Egelhofer TA, Campbell AC, Strome S. Germ-granule components prevent somatic development in the C elegans germline. Curr Biol. 2014 May 5;24(9):970-5. PubMed PMID: 24746798; PubMed Central PMCID: PMC4036631.

Tra VN, Dube DH. Glycans in pathogenic bacteria–potential for targeted covalent therapeutics and imaging agents. Chem Commun (Camb). 2014 May 11;50(36):4659. PubMed PMID: 24647371; PubMed Central PMCID: PMC4049282.

Bavis RW, van Heerden ES, Brackett DG, Harmeling LH, Johnson SM, Blegen HJ, Logan S, Nguyen GN, Fallon SC. Postnatal development of eupneic ventilation and metabolism in rats chronically exposed to moderate hyperoxia. Respir Physiol Neurobiol. 2014 Jul 1;198:1-12. PubMed PMID: 24703970; PubMed Central PMCID: PMC4066817.

Chun RF, Blatter E, Elliott S, Fitz-Gibbon S, Rieger S, Sagasti A, Adams JS, Hewison M. Cloning of a functional 25-hydroxyvitamin D-1α-hydroxylase in zebrafish (Danio rerio). Cell Biochem Funct. 2014 Dec;32(8):675-82. PubMed PMID: 25290078; PubMed Central PMCID: PMC4363119.

Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ. Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles. Evol Dev. 2014 Jul-Aug;16(4):189-96. PubMed PMID: 24798503; PubMed Central PMCID: PMC4215941.

Stone JL, VanWyk EJ, Hale JR. Transmission advantage favors selfing allele in experimental populations of self-incompatible Witheringia solanacea (solanaceae).Evolution. 2014 Jul;68(7):1845-55. PubMed PMID: 24713065; PubMed Central PMCID: PMC4079751.

Kohorn BD, Kohorn SL, Saba NJ, Martinez VM. Requirement for pectin methyl esterase and preference for fragmented over native pectins for wall-associated kinase-activated, EDS1/PAD4-dependent stress response in Arabidopsis. J Biol Chem. 2014 Jul 4;289(27):18978-86. PubMed PMID: 24855660; PubMed Central PMCID: PMC4081937.

Bennett RJ, Forche A, Berman J. Rapid mechanisms for generating genome diversity: whole ploidy shifts, aneuploidy, and loss of heterozygosity. Cold Spring Harb Perspect Med. 2014 Jul 31;4(10)PubMed PMID: 25081629; PubMed Central PMCID: PMC4200206.

Maginnis MS, Nelson CD, Atwood WJ. JC polyomavirus attachment, entry, and trafficking: unlocking the keys to a fatal infection. J Neurovirol. 2014 Jul 31;PubMed PMID: 25078361; PubMed Central PMCID: PMC4312552.

Bing X, Rzezniczak TZ, Bateman JR, Merritt TJ. Transvection-based gene regulation in Drosophila is a complex and plastic trait. G3 (Bethesda). 2014 Sep 11;4(11):2175-87. PubMed PMID: 25213691; PubMed Central PMCID: PMC4232543.

Shaw JR, Hampton TH, King BL, Whitehead A, Galvez F, Gross RH, Keith N, Notch E, Jung D, Glaholt SP, Chen CY, Colbourne JK, Stanton BA. Natural selection canalizes expression variation of environmentally induced plasticity-enabling genes. Mol Biol Evol. 2014 Nov;31(11):3002-15. PubMed PMID: 25158801; PubMed Central PMCID: PMC4209136.

Wartenberg A, Linde J, Martin R, Schreiner M, Horn F, Jacobsen ID, Jenull S, Wolf T, Kuchler K, Guthke R, Kurzai O, Forche A, d’Enfert C, Brunke S, Hube B. Microevolution of Candida albicans in macrophages restores filamentation in a nonfilamentous mutant.PLoS Genet. 2014 Dec;10(12):e1004824. PubMed PMID: 25474009; PubMed Central PMCID: PMC4256171.

Palopoli MF, Minot S, Pei D, Satterly A, Endrizzi J. Complete mitochondrial genomes of the human follicle mites Demodex brevis and D folliculorum: novel gene arrangement,truncated tRNA genes, and ancient divergence between species. BMC Genomics. 2014 Dec 16;15:1124. PubMed PMID: 25515815; PubMed Central PMCID: PMC4320518.

Prentiss NK, Vasileiadou K, Faulwetter S, Arvanitidis C, Hove HA. A new genus and species of Serpulidae (Annelida, Polychaeta, Sabellida) from the Caribbean Sea. Zootaxa. 2014 Dec 22;3900(2):204-22. PubMed PMID: 25543733; NIHMSID: 663724.

Rieger S, Zhao H, Martin P, Abe K, Lisse TS. The role of nuclear hormone receptors in cutaneous wound repair. Cell Biochem Funct. 2015 Jan;33(1):1-13. doi: 10.1002/cbf.3086. Epub 2014 Dec 22. Review. PubMed PMID: 25529612; PubMed Central PMCID: PMC4357276.

KEY 2013-2009
* denotes an INBRE-funded student
¹ denotes INBRE Junior Faculty

2013

†*Ahmad ST, Steinmetz S, Bussey H, Possidente B, Seggio J.  Larval ethanol exposure alters free-running circadian rhythm and per Locus transcription in adult D. melanogaster period mutants.  Behavioral Brain Research 2013;241: 50-55. PMID: 23219838. PMCID: PMC3552313 [Available on 2014/3/15].

Archambault L, Linscott J, Swerdlow N, Boyland K, Riley E, ¹Schlax P. Translational efficiency of rpoS mRNA from Borrelia burgdorferi: effects of the length and sequence of the mRNA leader region. Biochem Biophys Res Commun. 2013 Mar 29;433(1):73-8. PMID: 23454119. PMCID: PMC3616328 [Available on 2014/3/29].

†¹Bateman JR, Palopoli MF, *Dale ST, *Stauffer JE, *Shah AL, *Johnson JE, *Walsh CW,  *Flaten H, *Parsons CM. Captured segment exchange: a strategy for custom engineering large genomic regions in Drosophila melanogaster. Genetics 2013 Feb;193(2):421-30. PMID: 23150604. PMCID: PMC3567733.

†Bavis RW, *Fallon SC, Dmitrieff EF. Chronic hyperoxia and the development of the carotid body. Respir Physiol Neurobiol. 2013;185: 94-104. PMID: 22640932. PMCID: PMC3448014.

Davis AP, Murphy CG, Johnson R, Lay JM, Lennon-Hopkins K, Saraceni-Richards C, Sciaky D, King BL, Rosenstein MC, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database: update 2013. Nucleic Acids Res. 2013 41(D1):D1104-14. PMID: 23093600. PMCID: PMC3531134.

†Gratacap RL, Rawls JF, ¹Wheeler RT. Mucosal candidiasis elicits activation of NF-κB, proinflammatory gene expression and localized neutrophilia in a transparent vertebrate host. Dis Model Mech. 2013 May 29. [Epub ahead of print]. PMID: 23720235. PMC In process.

†*Kwiatkowski MA, *Gabranski ER, *Huber KE, Chapline MC, Christie AE, Dickinson PS. Coordination of distinct but interacting rhythmic motor programs by a modulatory projection neuron using different co-transmitters in different ganglia. Journal of Experimental Biology  2013. PMID: 23393282.  Epub ahead of print 2013/2/7. PMC Journal – PMC submission in process.

Lisse TS, Chun RF, ¹Rieger S, Adams JS, Hewison M: Vitamin D activation of functionally distinct regulatory miRNAs in primary human osteoblasts. J Bone Miner Res. 2013 Jun;28(6):1478-88.PMID: 23362149. PMCID: PMC3663893 [Available on 2014/6/1].

Mangiamele LA, Keeney AD, *D’Agostino EN, Thompson RR. Pheromone exposure influences preoptic arginine vasotocin expression and inhibits social approach behavior in response to rivals, but not potential mates. Brain Behavior and Evolution 2013 May 21:194-202 [Epub ahead of print]. PMID: 23712040.  PMC in process.

†Marakalala MJ, Vautier S, Potrykus J, Walker LA, Shepardson KM, Hopke A, Mora-Montes HM, Kerrigan A, Netea MG, Murray GI, MacCallum D M, ¹Wheeler R, Munro CA, Gow NAR, Cramer RA, Brown AJ, Brown GD. Differential adaptation of Candida albicans in vivo modulates immune recognition by Dectin-1. PLoS Pathogens 2013 Apr;9(4):e1003315. PMID: 23637604. PMCID: PMC3630191.

†*Naing SH, *Parvez S, *Pender-Cudlip M, Groves JT, Austin RN. Substrate specificity and reaction mechanism of purified alkane hydroxylase from the hydrocarbonoclastus bacterium Alcanivorax borkumensis (AbAlkB). Journal of Inorganic Biochemistry 2013 Apr;121:46-52. PMID: 23337786. PMCID: PMC3595352 [Available on 2014/4/1].

†Robertson AJ, Coluccio A, Jensen S, Rydlizky K, Coffman JA. Sea urchin akt activity is Runx-dependent and required for post-cleavage stage cell division. BiO Biology Open 2013  March 18. Advance online article 2013/3/28. PMC Journal – PMC submission in process.

†*St.Laurent R, *Helm SR, ¹Glenn MJ. Reduced cocaine-seeking behavior in heterozygous BDNF knockout rats. Neuroscience Letters 2013 April 9 [Epub ahead of print]. PMID: 23583595. PMC in process.

†*Williams AH, Kwiatkowski MA, Mortimer AL, Marder E, Zeeman ML, Dickinson PS. Animal-to-animal variability in the phasing of the crustacean cardiac motor pattern: an experimental and computational analysis. J Neurophysiology 2013 May;109(10):2451-65. PMID: 23446690. PMCID: PMC3653045 [Available on 2014/5/15].

†Yamada T, Bhate MP, Strange K. Regulatory phosphorylation induces extracellular conformational changes in a CLC anion channel. Biophys J. 2013 May 7;104(9):1893-904. PMID: 23663832. PMCID: PMC3647193 [Available on 2014/5/7].

Eusden JD, Upton P, Pettinga JR, Eichelberger N. Cross faults and block rotation in the Clarence Elliot Fault Wedge, Marlborough Fault System, South Island, New Zealand: New Zealand Journal of Geology and Geophysics. In press.

†¹Jackman WR, Davies SH, Lyons DB, *Stauder CK, Denton-Schneider B R, Jowdry A, Aigler SR, Vogel SA, Stock DW. Manipulation of Fgf and Bmp signaling in teleost fishes suggests potential pathways for the evolutionary origin of multicuspid teeth. Evolution and Development 2013;15:2. In press.

†*Pfister A, Johnson A, Ellers O, Horch HW. Quantification of dendritic and axonal growth after injury to the auditory system of the adult cricket Gryllus bimaculatus.  Frontiers in Invertebrate Physiology 2013;3:367. doi: 10.3389/fphys.2012.00367. In press.

†Carroll JL, Kim I, Dbouk H, Yang DJ, Bavis RW, Donnelly DF. Time-dependence of hyperoxia-induced impairment in peripheral chemoreceptor activity and glomus cell calcium response. Advances in Experimental Medicine and Biology 2009;648: 299-306.

Sommer RJ. Cardiac Physiology and Pharmacology. In: Cardiovascular Toxicology, Vol. 6 of Comprehensive Toxicology Series, Eds. MK Walker and MJ Campen. Elsevier: Amsterdam, The Netherlands 2010; pp 51-67.

Eusden JR Jr., Duvall ML, Bryant M, 2012, Google Earth mashup of the geology in the Presidential Range, NH: linking real and virtual field trips for an introductory geology class.  In  Google Earth and Virtual Visualizations in Geoscience Education and Research, Eds. Whitmeyer S, Bailey J, De Paor D, Ornduff T, Geological Society of America Special Paper. In press.

2012

Bateman JR, Johnson JE, *Locke MN. Comparing enhancer action in cis and in trans. Genetics 2012a;191: 1143-1155. PubMed PMID: 22649083. PMCID: PMC3415998.

Bateman JR,Larschan E,D’Souza R, *Marshall LS, Dempsey KE, Johnson JE, Mellone BG, Kuroda MI. A genome-wide screen identifies genes that affect somatic homolog pairing in Drosophila. G3: Genes, Genomes, Genetics 2012b;2: 731-740. PMID: 22870396. PMCID: PMC3385979.

Brothers K, ¹Wheeler RT. Non-invasive imaging of zebrafish larvae as a model of disseminated candidiasis. Journal of Visualized Experiments 2012;30(65):pii 4051. PMID: 22872032. PMCID: PMC3468152.

Carey CC, Ewing HA, Cottingham KL, Weathers KC, Thomas RQ, and Haney JF. Occurrence and toxicity of the cyanobacterium Gloeotrichia echinulata for low nutrient lakes in the northeastern United States.  Aquatic Ecology 46:395-409, 2012.

Christie AE, Nolan DH, *Garcia ZA, McCoole MD, Harmon SM, Congdon-Jones B, Ohno P, Hartline N, Congdon CB, Baer KN, Lenz PH. Bioinformatic prediction of arthropod/nematode-like peptides in non-arthropod, non-nematode members of the Ecdysozoa. Gen Comp Endocrinol. 2011 Feb 1;170(3):480-6. PubMed PMID: 21074533. NIHMS: 252649.

Collin GB, Marshall JD, King BL, Milan G, Maffei P, Jagger DJ, Naggert JK. The Alström syndrome protein, ALMS1, interacts with α-actinin and components of the endosome recycling pathway. PLoS One 2012;7(5):e37925. PMID: 22693585. PMCID: PMC3365098.

Corriveau JA, ¹Glenn MJ. Postnatal choline levels mediate cognitive deficits in a rat model of schizophrenia. Pharmacology, Biochemistry, & Behavior 2012;103:60-68. PMID: 22917834. PMCID: PMC3537899.

Cutler CP, Harmon S, Walsh J, Burch K. Characterization of aquaporin 4 protein expression and localization in tissues of the dogfish (Squalus acanthias). Front Physiol. 2012;3:21. PMID: 22363294. PMCID: PMC3279706.

Cutler CP, MacIver B, Cramb G, Zeidel M. Aquaporin 4 is a ubiquitously expressed isoform in the dogfish (Squalus acanthias) shark. Front Physiol. 2011;2:107. PMID: 22291652. PMCID: PMC3254168.

Dmitrieff EF, *Piro SE, *Broge TA Jr., *Dunmire KB, Bavis RW. Carotid body growth during chronic postnatal hyperoxia. Respir Physiol Neurobiol. 2012;180: 193-203. PMID: 22138179. PMCID: PMC3273607.

Glenn MJ, *Adams RS, *McClurg L. Supplemental dietary choline during development exerts antidepressant-like effects in adult female rats. Brain Research 2012;1443: 52-63. PMID: 22305146. PMCID: PMC3327365.

Goodson JL, Kelly AM, Kingsbury MA, Thompson RR. An aggression-specific cell type in the anterior hypothalamus of finches. Proc Natl Acad Sci USA. 2012;109(34):13847-52. PMID:22872869. PMCID: PMC3427066.

King BL, Davis AP, Rosenstein MC, Wiegers TC, Mattingly CJ. Ranking transitive chemical-disease inferences using local network topology in the comparative toxicogenomics database. PLoS One 2012;7(11):e46524. PMID: 23144783. PMCID: PMC3492369.

Lee E, Strange K. GCN-2 dependent inhibition of protein synthesis activates osmosensitive gene transcription in C. elegans via WNK and Ste20 kinase signaling. Am. J. Physiol. (Cell Physiol.) 2012 Dec;303(12):C1269-77. PMID: 23076791. PMCID: PMC3532491 [Available on 2013/12/15].

Lehmann H, *Rourke BK, *Booker A, ¹Glenn MJ. Single session contextual fear conditioning remains dependent on the hippocampus despite an increase in the number of context-shock pairings during learning. Neurobiology of Learning and Memory 2012 Nov 7; PMID: 23142771.

Liang X, Da Paula AC, Bozóky Z, Zhang H, Bertrand CA, Peters KW, Forman-Kay JD, Frizzell RA. Phosphorylation-dependent 14-3-3 protein interactions regulate CFTR biogenesis. Mol Biol Cell. 2012 Mar;23(6):996-1009. PMID: 22278744. PMCID: PMC3302758.

McCoole M, *Atkinson N, *Graham D, *Grasser E, *Joselow A, *McCall N, *Welker A, *Wilsterman Jr E, *K. Baer, Tilden A, Christie A. Genomic analyses of aminergic signaling systems (dopamine, octopamine and serotonin) in Daphnia pulex. Comp Biochem Physiol D: Genomics Proteomics 2012 Mar;7; 7(1):35-58. PMID: 22137767. NIHMSID: 336880.

Meredith M, *Parry E, Guay J, *Markham N, Danner GR, Johnson K, Barkay T, Fekete F. Concomitant antibiotic and mercury resistance among gastrointestinal microflora of feral brook trout, Salvelinus fontinalis. Current Microbiology 2012;65: 575-582. PMID: 22850694. NIHMS: 442546.

Millard J, *McGowan E, *Bradley S. Diepoxybutane interstrand cross-links induce DNA bending.   Biochimie 2012;94: 574-577. PMID: 21839139. PMCID: PMC3236281.

Miyazaki H, Yamada T, Parton A, Morrison R, Kim S, Beth AH, Strange K. CLC anion channel regulatory phosphorylation and conserved signal transduction domains. Biophys J. 2012 Oct 17;103(8):1706-18. PMID: 23083714. PMCID: PMC3475328 [Available on 2013/10/17].

Miyazaki H, Strange K. Differential regulation of a CLC anion channel by SPAK kinase ortholog-mediated multisite phosphorylation. Am J Physiol Cell Physiol. 2012 Jun 15;302(12):C1702-12. PMID: 22357738. PMCID: PMC3378076 [Available on 2013/6/15].

Jiménez-López C, Collette JR, Brothers KM, Shepardson KM, Cramer RA, ¹Wheeler RT, Lorenz MC. Candida albicans induces arginine biosynthetic genes in response to host-derived reactive oxygen species. Eukaryotic Cell 2012 9 November;10.1128/EC.00290-12. PMID: 23143683. PMCID: PMC3535846.

Jung D, MacIver B, Jackson BP, Barnaby R, Sato JD, Zeidel ML, Shaw JR, Stanton BA. A novel aquaporin 3 in killifish (Fundulus heteroclitus) is not an arsenic channel. Toxicol Sci. 2012 May;127(1):101-9. PMID: 22323512. PMCID: PMC3327866.

Koeppen K, Chapline C, Sato JD, Stanton BA. Nedd4-2 does not regulate wt-CFTR in human airway epithelial cells. Am J Physiol Lung Cell Mol Physiol. 2012 Oct 15;303(8):L720-7. Epub 2012 Aug 17. PMID: 22904170. PMCID: PMC3469630 [Available on 2013/10/15].

Kohorn BD, Kohorn SL, *Todorova T, Baptiste G, Stansky K, McCullough M. A dominant allele of Arabidopsis pectin-binding wall-associated kinase induces a stress response suppressed by MPK6 but not MPK3 mutations. Mol Plant. 2012;5(4):841-51. PMID: 22155845. PMCID: PMC3399699 [Available on 2013/7/19].

Kohorn BD, Kohorn SL.  The cell wall associated kinases, WAKs, as pectin receptors. Frontiers in Plant Science 2012;3:88, 1-4. PMID: 22639672. PMCID: PMC3355716.

Lenz PH, Unal E, Hassett RP, Smith CM, Bucklin A, Christie AE, Towle DW. Functional genomics resources for the North Atlantic copepod, Calanus finmarchicus: EST database and physiological microarray. Comp Biochem Physiol Part D Genomics Proteomics 2012 Jun;7(2):110-23. Epub 2011 Dec 29. PMID: 22277925. NIHMSID: 346755. PMCID: PMC3586334.

Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ. MicroRNAs support a turtle + lizard clade. Biol Lett. 2012;8(1):104-7. PMID: 21775315. PMCID: PMC3259949.

Notch EG, Chapline C, Flynn E, *Lameyer T, *Lowell A, Sato JD, Shaw JR, Stanton BA. Mitogen activated protein kinase 14-1 regulates serum glucocorticoid kinase 1 during seawater acclimation in Atlantic killifish, Fundulus heteroclitus. Comp Biochem and Physiol – Part A: Mol & Integr Physiol. 2012 Aug;162(4):443-8. Epub 2012 May 2. PMID: 22575607. PMCID: PMC3365625.

Rice KP, Klinkerch EJ, Gerber SA, *Schleicher TR, Kraus TJ, *Buros CM. Thioredoxin reductase is inhibited by the carbamoylating activity of the anticancer sulfonylhydrazine drug Laromustine Mol Cell Biochem. 2012;370:199-207. PMID: 22864532. PMCID: PMC3469748 [Available on 2013/11/1].

Stone J, *Crystal P, *Devlin E, Downer R, Cameron D. Highest genetic diversity at the northern range limit of the rare orchid Isotria medeoloides. Heredity 2012;109: 215-221. PMID: 22692268. PMCID: PMC3464020 [Available on 2013/10/1].

Seritrakul P, Samarut E, *Lama TS, Gilbert Y, Laudet V, ¹Jackman WR. Retinoic acid expands the evolutionarily-reduced dentition of zebrafish. The FASEB Journal 2012;26: 5014-5024. PMID: 22942074. PMCID: PMC3509061.

Sun FF, Johnson JE, Zeidler MP, ¹Bateman JR. Simplified insertion of transgenes onto balancer chromosomes via recombinase-mediated cassette exchange. G3 (Bethesda) 2012;2: 551-553. PMID: 22670225. PMCID: PMC3362938.

Tobin DM, May RC, ¹Wheeler RT. Zebrafish: a see-through host and a fluorescent toolbox to probe host-pathogen interaction. PLoS Pathogens 2012;8(1):e1002349, PMID: 22241986. PMCID: PMC3252360.

Tossidou I, Niedenthal R, Klaus M, Teng B, Worthmann K, King BL, Peterson KJ, Haller H, Schiffer M. CD2AP regulates SUMOylation of CIN85 in podocytes. Mol Cell Biol. 2012;32(6):1068-79. PMID: 22203040. PMCID: PMC3295011.

Walker MB, King BL, Paigen K. Clusters of ancestrally related genes that show paralogy in whole or in part are a major feature of the genomes of humans and other species. PLoS One 2012;7(4):e35274. PMID: 22563380. PMCID: PMC3338513.

Wang Q, Arighi CN, King BL, Polson SW, Vincent J, Chen C, Huang H, Kingham BF, Page ST, Rendino MF, Thomas WK, Udwary DW, Wu CH; North East Bioinformatics Collaborative Curation Team. Community annotation and bioinformatics workforce development in concert–Little Skate Genome Annotation Workshops and Jamborees. Database (Oxford) 2012;2012:bar064. PMID: 22434832. PMCID: PMC3308154.

Wiwatpanit T, Powers B, Dickinson PS. Inter-animal variability in the effects of C-type allatostatin on the cardiac neuromuscular system in the lobster Homarus americanus. The Journal of Experimental Biology 2012;215, 2308-2318. PMID: 22675192. PMCID: PMC3368622.

Yin VP, Lepilina A, Smith A, Poss KD. Regulation of zebrafish heart regeneration by miR-133. Dev Biol. 2012 May 15;365(2):319-27. Epub 2012 Feb 20. PMID: 22374218. PMCID: PMC3342384.

2011

†Bavis RW, Dmitrieff EF, Young KM, Piro SE. Hypoxic ventilatory response of adult rats and mice after developmental hyperoxia. Respir Physiol Neurobiol. 2011;177: 342-346. PMID: 21601659. PMCID: PMC3131140.

†Bavis RW, Kim I, Pradhan N, Nawreen N, Dmitrieff EF, Carroll JL, Donnelly DF. Recovery of carotid body O₂sensitivity following chronic postnatal hyperoxia in rats. Respir Physiol Neurobiol. 2011;177: 47-55. PMID: 21420511. PMCID: PMC3081780.

†Brothers K, Newman Z, ¹Wheeler RT. Live imaging of disseminated candidiasis in zebrafish reveals role of phagocyte oxidase in limiting filamentous growth. Eukaryotic Cell 2010;May 6. PMID: 21551247. PMCID: PMC3147414.

†*Cary GA, *Cutler AS, *Duda KA, *Kusema ET, *Myers JA, Tilden AR. Melatonin: neuritogenic and neuroprotective effects in crustacean x-organ cells. Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology 2011;161:355-360. PMID: 22200560. PMCID: PMC3288472. 

†Christie AE, Chapline MC, Jackson JM, Dowda JK, Hartline N, Malecha SR, Lenz PH. Identification, tissue distribution and orexigenic activity of neuropeptide F (NPF) in penaeid shrimp. J Exp Biol. 2011 Apr 15;214(Pt 8):1386-96. PMID: 21430216. PMCID: PMC3063113.

†Christie AE, *Nolan DH, Ohno P, Hartline N, Lenz PH. Identification of chelicerate neuropeptides using bioinformatics of publicly accessible expressed sequence tags. Gen Comp Endocrinol. 2011 Jan 1;170(1):144-55. PMID: 20888826. NIHMSID: 249259. PMC in process.

Coluccio AE, LaCasse TJ, Coffman JA. Oxygen, pH, and oral-aboral axis specification in the sea urchin embryo. Mol Reprod Dev. 2011 Feb;78(2):68. PMID: 21254277.

†Davis AP, King BL, Mockus S, Murphy CG, Saraceni-Richards C, Rosenstein M, Wiegers T, Mattingly CJ. The Comparative Toxicogenomics Database: update 2011. Nucleic Acids Res. 2011;39 (Database issue):D1067-72. PMID: 20864448. PMCID: PMC3013756.

†Davis AP, Rosenstein M, Wiegers T, Mattingly CJ. DiseaseComps: a metric that discovers similar diseases based upon common toxicogenomic profiles at CTD. Bioinformation 2011;7(4):154-6. Epub 2011 Oct 14. PMID: 22125387. PMCID: PMC3220301.

†Davis AP, Wiegers TC, Rosenstein MC, Murphy CG, Mattingly CJ. The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database. Database (Oxford) Sep 20;2011:bar034. PMID: 21933848. PMCID: PMC3176677.

†Dmitrieff EF, Wilson JT, Dunmire KB, Bavis RW. Chronic hyperoxia alters the expression of neurotrophic factors in the carotid body of neonatal rats. Respir Physiol Neurobiol. 2011;175: 220–227. PMID: 21094282. PMCID: PMC3033470.

Ertl RP, Robertson AJ, *Saunders D, Coffman JA. Nodal-mediated epigenesis requires dynamin-mediated endocytosis. Dev Dyn. 2011 Mar;240(3):704-11. PubMed PMID: 21337468. PubMed Central PMCID: PMC3079387.

Evans DH, Hyndman KA, Cornwell E, Buchanan P. Urotensin II and its receptor in the killifish gill: regulators of NaCl extrusion. J Exp Biol. 2011 Dec 1;214(Pt 23):3985-91. PMID: 22071190.

Falin RA, Miyazaki H, Strange K. C. elegans STK39/SPAK ortholog-mediated inhibition of ClC anion channel activity is regulated by WNK-independent ERK kinase signaling. Am J Physiol Cell Physiol. 2011 Mar;300(3):C624-35. PMID: 21160027. PMCID: PMC3063977.

Fehsenfeld S, Kiko R, Appelhans Y, Towle DW, Zimmer M, Melzner F. Effects of elevated seawater pCO₂ on gene expression patterns in the gills of the green crab, Carcinus maenas. BMC Genomics 2011 Oct 6;12:488. PMID: 21978240. PMCID: PMC3206878.

†Forche A, Abbey D, *Pisithkul T.  Stress alters rates and types of loss heterozygosity in Candida albicans.  MBio.2011 Jul 26;2(4). PMID: 21791579.  PMCID: PMC3143845.

†Ginther MR,  Walsh DF, Ramus SJ.  Hippocampal neurons encode different episodes in an overlapping sequence of odors task. J Neurosci. 2011 February 16;31(7): 2706-2711. PMID: 21325539. PMCID: PMC3047458.

Hannah RM, Dunn KM, Bonev AD, Nelson MT. Endothelial SK(Ca) and IK(Ca) channels regulate brain parenchymal arteriolar diameter and cortical cerebral blood flow. J Cereb Blood Flow Metab. 2011 May;31(5):1175-86. PMID: 21179072. PMCID: PMC3099631.

†Horch HW, *Sheldon E, *Cutting CC, *Williams CR, *Riker DM, *Peckler HR, *Sangal RB. Bilateral consequences of chronic unilateral deafferentation in the auditory system of the cricket Gryllus bimaculatus. Dev Neurosci. 2011;33(1):21-37. PMID: 21346310. PMCID: PMC3080781. 

Howell GR, Macalinao DG, Sousa GL, Walden M, Soto I, Kneeland SC, Barbay JM, King BL, Marchant JK, Hibbs M, Stevens B, Barres BA, Clark AF, Libby RT, John SW. Molecular clustering identifies complement and endothelin induction as early events in a mouse model of glaucoma. J Clin Invest. 2011;121(4):1429-44. PMID: 21383504. PMCID: PMC3069778.

Howell GR, Walton DO, King BL, Libby RT, John SW. Datgan, a reusable software system for facile interrogation and visualization of complex transcription profiling data. BMC Genomics 2011;12:429. PMID: 21864367. PMCID: PMC3171729.

†Johnson S, *Harmon KJ, *Smiley SG, *Still FM, Kavaler J. Discrete regulatory regions control early and late expression of D-Pax2 during external sensory organ development. Developmental Dynamics 2011;240:1769. PMID: 21644243. PMCID: PMC3289681.

†Jung D, Sato JD, Shaw JR, Stanton BA. Expression of aquaporin 3 in gills of the Atlantic killifish (Fundulus heteroclitus): Effects of seawater acclimation.  Comp Biochem Physiol A Mol Integr Physiol. 2012 Mar;161(3):320-6. Epub available online 12/13/2011. PMID: 22193757. PMCID: PMC3264823.

†Kelly AM, Kingsbury MA, Hoffbuhr K, Schrock SE, Waxman B, Kabelik D, Thompson RR, Goodson JL. Vasotocin neurons and septal V1a-like receptors potently modulate songbird flocking and responses to novelty.  Hormones and Behavior 2011;60: 12-21. PMID: 21295577.  PMCID: PMC3106146.

†King BL, Gillis JA, Carlisle HR, ¹Dahn RD. A natural deletion of the HoxC cluster in elasmobranch fishes. Science 2011;334(6062):1517. PMID: 22174244. PMCID: PMC3264428.

Kikuchi K, Holdway JE, Major RJ, Blum N, ¹Dahn RD, Begemann G, Poss KD. Retinoic acid production by endocardium and epicardium is an injury response essential for zebrafish heart regeneration. Dev Cell. 2011 Mar 15;20(3):397-404. PMID: 21397850. PMCID: PMC3071981.

Lee Y, Smith RS, Jordan W, King BL, Won J, Valpuesta JM, Naggert JK, Nishina PM. Prefoldin 5 is required for normal sensory and neuronal development in a murine model. J Biol Chem. 2011;286(1):726-36. PMID: 20956523. PMCID: PMC3013031.

†Notch EG, Chapline C, Flynn E, *Lameyer T, *Lowell A, Sato JD, Shaw JR, Stanton BA. Mitogen Activated Protein Kinase 14-1 Regulates Serum Glucocorticoid Kinase 1 During Seawater Acclimation in Atlantic killifish, Fundulus heteroclitus. Comp Biochem and Physiol – Part A: Mol & Integr Physiol,. December 2011. PMID: 22575607.  PMCID: PMC3365625.

Roeser JC, Brackett DG, van Heerden ES, Young KM, Bavis RW. Potentiation of the hypoxic ventilatory response by 1 day of hyperoxia in neonatal rats. Respir Physiol Neurobiol. 2011 Apr 30;176(1-2):50-6. PMID: 21238615. PMCID: PMC3055919.

Schneider I, Aneas I, Gehrke AR, ¹Dahn RD, Nobrega MA, Shubin NH. Appendage expression driven by the Hoxd Global Control Region is an ancient gnathostome feature. Proc Natl Acad Sci U S A. 2011; 108(31):12782-6. PMID: 21765002. PMCID: PMC3150877.

†Tilden A, McCoole M, *Harmon S, *Baer K, Christie AE. Genomic identification of a putative circadian system in the cladoceran crustacean Daphnia pulex. Comp Biochem Physiol D: Genomics Proteomics 2011;6(3):282-309.  PMID: 21798832. NIHMSID: 308881.  PMC in process.

Van Goor F, Hadida S, Grootenhuis PD, Burton B, Stack JH, Straley KS, Decker CJ, Miller M, McCartney J, Olson ER, Wine JJ, Frizzell RA, Ashlock M, Negulescu PA. Correction of the F508del-CFTR protein processing defect in vitro by the investigational drug VX-809. Proc Natl Acad Sci U S A. 2011 Nov 15;108(46):18843-8. PMID: 21976485. PMCID: PMC3219147.

2010

†Ashworth S, Teng B, Kaufeld J, *Miller E, Tossidou I, Englert C, Bollig F, Staggs L, Roberts IS, Park JK, Haller H, Schiffer M. Cofilin-1 inactivation leads to proteinuria–studies in zebrafish, mice and humans. PLoS One 2010 Sep8;5(9):e12626. PMID: 20838616. PMCID: PMC2935884.

Baker-Herman TL, Bavis RW, Dahlberg JM, Mitchell AZ, Wilkerson JE, Golder FJ, Macfarlane PM, Watters JJ, Behan M, Mitchell GS. Differential expression of respiratory long-term facilitation among inbred rat strains. Respir Physiol Neurobiol. 2010 Mar 31;170(3):260-7. PMID: 20036763. PMCID: PMC2844459.

Bavis RW, Young KM, Barry KJ, Boller MR, Kim E, Klein PM, Ovrutsky AR, Rampersad DA. Chronic hyperoxia alters the early and late phases of the hypoxic ventilatory response in neonatal rats. J Appl Physiol. 2010 Sep;109(3):796-803. PMID20576840. PMCID: PMC2944635.

Bleich A, Büchler G, Beckwith J, Petell LM, Affourtit JP, King BL, Shaffer DJ, Roopenian DC, Hedrich HJ, Sundberg JP, Leiter EH. Cdcs1 a major colitis susceptibility locus in mice; subcongenic analysis reveals genetic complexity. Inflamm Bowel Dis. 2010;16(5):765-75.  PMID: 19856516. PMCID: PMC2857671.

†Christie, AE, *Stevens JS, *Bowers MR, Chapline MC, Jensen DA, Schregg K, *Goldwaser J, *Kwiatkowski MA,  Pleasant Jr TK, Shoenfeld L, Tempest LK, Williams CR,  *Wiwatpanit T,  *Gabranski ER, Smith CM, Beale KM, Towle DW, Schooley DA, Dickinson PS.  Identification of a calcitonin-like diuretic hormone that functions as an intrinsic modulator of the American lobster, Homarus americanus, cardiac neuromuscular system. Journal of Experimental Biology 2010;213, 118-127. PMID: 20008368. PMCID: PMC2792589.

†Christie AE, Durkin CS, Hartline N, Ohno P, Lenz PH. Bioinformatic analyses of the publicly accessible crustacean expressed sequence tags (ESTs) reveal numerous novel neuropeptide-encoding precursor proteins, including ones from members of several little studied taxa. Gen Comp Endocrinol. 2010 May 15;167(1):164-78. PMID: 20064519. NIHMSID: 170289.

†Christie AE, Stemmler EA, Dickinson PS. Crustacean neuropeptides. Cell Mol Life Sci. 2010 Dec;67(24):4135-69. PMID: 20725764.

Edwards SL, Weakley JC, Diamanduros AW, Claiborne JB. Molecular identification of Na(+)-H(+) exchanger isoforms (NHE2) in the gills of the euryhaline teleost Fundulus heteroclitus. J Fish Biol. 2010 Feb;76(2):415-26. PMID: 20738718.

†Gibert Y, Bernard L, Debiais-Thibaud M, Bourrat F, Joly JS, Pottin K, Meyer A, Retaux S, Stock DW, ¹Jackman WR,Seritrakul P, Begemann G, Laudet V. Formation of oral and pharyngeal dentition in teleosts depends on differential recruitment of retinoic acid signaling. FASEB J. 2010 Sep;24(9):3298-309. PMID: 20445074. PMCID: PMC2923347.

Hartline DK, Christie AE. Immunohistochemical mapping of histamine, dopamine,  and serotonin in the central nervous system of the copepod Calanus finmarchicus (Crustacea; Maxillopoda; Copepoda). Cell Tissue Res. 2010 Jul;341(1):49-71. PMID: 20532915.

Hasham MG, Donghia NM, Coffey E, Maynard J, Snow KJ, Ames J, Wilpan RY, He Y, King BL, Mills KD. Widespread genomic breaks generated by activation-induced cytidine deaminase are prevented by homologous recombination. Nat Immunol. 2010;11(9):820-6. PMID: 20657597. PMCID: PMC2930818.

†¹Jackman WR, *Yoo JJ, Stock DW. Hedgehog signaling is required at multiple stages of zebrafish tooth development. BMC Developmental Biology 2010;10:119. PMID: 21118524. PMCID: PMC3001715.

†McCall AS, Kraft S, Edelhauser HF, Kidder GW, Lundquist RR, Bradshaw HE, *Dedeic Z, Dionne MJ, *Clement EM, Conrad GW.  Mechanisms of corneal tissue cross-linking in response to treatment with topical riboflavin and long-wavelength ultraviolet radiation (UVA). Invest Ophthalmol Vis Sci. 2010 Jan;51(1):129-38. PMID: 19643975. PMCID: PMC2869064.

†Planchart A, Mattingly CJ. 2,3,7,8-TCDD upregulates FoxQ1b in zebrafish jaw primordium. Chemical Research in Toxicology 2010. PMID: 20055451, PMCID: PMC2839046.

Shaw JR, Bomberger JM, VanderHeide J, LaCasse T, Stanton S, Coutermarsh B, Barnaby R, Stanton BA. Arsenic inhibits SGK1 activation of CFTR Cl- channels in the gill of killifish, Fundulus heteroclitus. Aquat Toxicol. 2010 Jun 10;98(2):157-64. PMID: 20207026. PMCID: PMC3062055.

†Stemmler EA, *Bruns EA, *Cashman CR, Dickinson PS, Christie AE. Molecular and mass spectral identification of the broadly conserved decapod crustacean neuropeptide pQIRYHQCYFNPISCF: The first PISCF-allatostatin (Manduca sexta- or C-type allatostatin) from a non-insect.  General and Comparative Endocrinology  2010;165(1):1-10. PMID: 19467234.  PMCID: PMC3538855.

†Stone, JL, *Wilson EE, *Kwak AS. Embryonic inbreeding depression varies among populations and by mating system in Witheringia solanacea (Solanaceae).  American Journal of Botany 2010;97(8): 1328-1333. PMID: 21616885. NIHMS: 469628. PMC in process.

†*Wadugu BA, *Ng C, *Bartley BL, Rowe RJ, Millard JT. DNA interstrand cross-linking activity of (1-Chloroethenyl)oxirane, a metabolite of beta-chloroprene.  Chemical Research in Toxicology 2010;23: 235-239. PMID: 20030381. PMCID: PMC2814250.

†Walton JC, Waxman B, Hoffbuhr K, Kennedy M, *Beth E, Scangos J, Thompson RR. Behavioral effects of hindbrain vasotocin in goldfish are seasonally variable but not sexually dimorphic.  Neuropharmacology 2010;58(1):126-34.  PMID: 19616564. NIHMSID: 434052. PMCID: PMC3628676.

†Wilson CH, Christie AE. Distribution of C-type allatostatin (C-AST)-like immunoreactivity in the central nervous system of the copepod Calanus finmarchicus. Gen Comp Endocrinol. 2010 Jun 1;167(2):252-60. PMID: 20338176. PMCID: PMC2921218.

2009

†Baker PJ, Boutaugh NR, *Tiffany M, Roopenian DC. B Cell IgD Deletion Prevents Alveolar Bone Loss Following Murine Oral Infection. Interdiscip Perspect Infect Dis. 2009;864359. PMID: 19859584. PMCID: PMC2766505.

†*Clark SE, Brooke A, Jude G, Fekete FA. Identification of a multidrug efflux pump in Flavobacterium johnsoniae. Veterinary Research 2009;40:55. PMID: 19558960. PMCID: PMC2717357.

†Davis AP, Murphy CG, Saraceni-Richards CA, Rosenstein MC, Wiegers TC, *Hampton TH, and Mattingly CJ. GeneComps and ChemComps: a new CTD metric to identify genes and chemicals with shared toxicogenomic profiles. Bioinformation 2009;4, 173-174. PMID: 20198196, PMCID: PMC2825594.

†*Dziedzic KJ, Prescott HH, Kavaler J. The transcription factor D-Pax2 regulates crystallin production during eye development in Drosophila melanogaster.  Developmental Dynamics 2009;238: 2530-2539. PMID: 19718746. PMCID: PMC2797132. 

†Donnelly DF, Bavis RW, Kim I, Dbouk HA, Carroll JL. Time course of alterations in pre- and post-synaptic chemoreceptor function during developmental hyperoxia. Respir Physiol Neurobiol. 2009 Sep 30;168(3):189-97. PMID: 19465165. PMCID: PMC2752858.

†Greenwood, PG. Acquisition and use of nematocysts by cnidarian predators.  Toxicon 2009;54: 1065-70. PMID:19269306. PMCID: PMC2783962. 

†Horch HW, McCarthy SS, Johansen SL, *Harris JM. Differential gene expression during compensatory sprouting of dendrites in the auditory system of the cricket Gryllus bimaculatus. Insect Molecular Biology 2009 Aug;18: 483-496. PMID: 19453768. PMCID: PMC3551613. 

†Kohorn BD, Johansen S, Shishido A, *Todorova T, Martinez R, Defeo E, *Obregon P.  Pectin activation of MAP kinase and gene expression is WAK2 dependent. The Plant Journal 2009;60(6):974-82.  PMID:19737363, PMCID: PMC3575133.

†LaRiviere FJ, *Newman AG, *Watts ML, *Bradley SQ, *Juskewitch JE, Greenwood PG, Millard JT. Quantitative PCR analysis of diepoxybutane and epihalohydrin damage to nuclear versus mitochondrial DNA.  Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 2009;664: 48-54. PMID: 19428380, PMCID: PMC2727856.

†*Lord LD, Bond J, hompson RR. Rapid steroid effects on visually guided sexual approach responses in male goldfish. Hormones and Behavior 2009 Nov;56(5) 519-526, PMID19751737. NIHMSID: 434041. PMCID PMC3628673.

†Ma M, Bors EK, *Dickinson ES, *Kwiatkowski MA, *Sousa GL, Henry RP, Smith CM, Towle DW, Christie AE, Li L.   Characterization of the Carcinus maenas neuropeptidome using mass spectrometry and functional genomics.  Gen Comp Endocrinol. 2009 May;161; 320-334, 2009. PMID: 19523386. PMCID: PMC2888039.

MacIver B, Cutler CP, Yin J, Hill MG, Zeidel ML, Hill WG. Expression and functional characterization of four aquaporin water channels from the European eel (Anguilla anguilla). J Exp Biol. 2009 Sep 1;212(17):2856-63. PMID: 19684221. PMCID: PMC2727460.

†Mattingly CJ, * Hampton T, Brothers K, Griffin NE, Planchart A. Perturbation of defense pathways by low-dose arsenic exposure in zebrafish embryos. Environ Health Perspect. 2009 Jun;117(6):981-7. PMID: 19590694. PMCID: PMC2702417.

†McBride AE, Conboy AK, Brown SP, *Ariyachet C, Rutledge KL.  Specific sequences within arginine-glycine-rich domains affect mRNA-binding protein function. Nucleic Acids Research 2009;37(13):4322-30. 2009.  PMID: 19454603, PMCID: PMC2715232.

Reinholdt LG, Czechanski A, Kamdar S, King BL, Sun F, Handel MA. Meiotic behavior of aneuploid chromatin in mouse models of Down syndrome. Chromosoma 2009;118(6):723-36.  PMID: 19639331. PMCID: PMC2848991.

†*Stevens JS, *Cashman CR, Smith CM, Beale KM, Towle DW, Christie AE, Dickinson PS. The peptide hormone pQDLDHVFLRFamide (crustacean myosuppressin) modulates the Homarus americanus cardiac neuromuscular system at multiple sites. J Exp Biol. 2009 Dec;212(Pt 24):3961-76. PMID: 19946074. PMCID: PMC2784736.

†Wiegers TC, Davis AP, Cohen KB, Hirschman L, Mattingly CJ. Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD). BMC Bioinformatics 2009;Oct 8;10:326. PMID: 19814812. PMCID: PMC2768719.

Key 2008-2004:

* denotes an INBRE author
¹ denotes INBRE Junior Faculty
² denotes an INBRE funded student
t or f indicates that INBRE support was acknowledged

2008

t*Barnes, D.W., Parton, A., Tomana, M., *Hwang, J-H, *Czenchanski, A., Fan, L, and Collodi, P. 2008. Stem cells from cartilaginous and bony fish. Methods in Cell Biology, 86:343-67.

t¹Bavis, R.W. and Mitchell, G.S. 2008. Long-term effects of the perinatal environment on respiratory control. Journal of Applied Physiology 104:1220-1229. PMID 18187608.

fBavis, R.W., Wenninger, J.M., ²Miller, B.M., *Ferguson, E.K., Olson, Jr., E.B., Mitchell, G.S., and Bisgard. G.E. 2008. Respiratory plasticity after perinatal hyperoxia is not prevented by antioxidant supplementation. Respiratory Physiology & Neurobiology 160:301-312. PMID 18069076.

Blitz, D.M., White, R.S., Saideman, S.R., *Christie, A.E., Nadim, F., and Nusbaum, M.P. A newly identified extrinsic input triggers a distinct gastric mill rhythm via activation of modulatory projection neurons. J. Exp. Biol. 211:1000-1011, 2008. PMID 18310125.

tChristie, A.E., ²Sousa, G.L, ²Rus, S., *Smith, C.M., *Towle, D.W., Hartline, O.K., and *Dickinson, P.S. 2008. Identification of A-type allatostatins possessing -YXFGI/Vamide carboxy-termini from the nervous system of the copepod crustacean Calanus finmarchicus. Gen. Comp. Endocrinol. 155:526-33. PMID 17950732.

*Christie, A.E. Neuropeptide discovery in Ixodoidea: an in silico investigation using publicly accessible expressed sequence tags. Gen. Comp. Endocrinol. 157:174-185, 2008. PMID 18495123.

*Christie, A.E., ²Cashman, C.R., Brennan, H.R., Ma, M., ²Sousa, G.L, Li, L., Stemmler, E.A., and *Dickinson, P.S. Identification of putative crustacean neuropeptides using in silico analyses of publicly accessible expressed sequence tags. Gen. Comp. Endocrinol. 156:246-264, 2008. PMID 18321503.

t¹Congdon, CB, ²Aman, J., Nava, G.M., Gaskins, R.H., and Mattingly, ¹C. 2008. An evaluation of information content as a metric for the inference of putative conserved non-coding regions in DNA sequence using a genetic algorithms approach. IEEE/ACM TCBB. PMID 18245871.

*Connell, L.B., Redman, R., Craig, S.D., Scorzetti ,G., Iszard, M., and Rodriguez, R. 2008. Diversity of soil yeasts isolated from South Victoria Land, Antarctica. DOI 10.1007/s00248-008-9363-1. PMID 18253776.

*Connell, L.B., Barrett, A., and Iszard, M. The cytochrome B (cob) and ribosomal large subunit (LSD) genes as probe targets for the potato wart fungus, Synchytrium endobioticum. 2008. In Northeast Potato Technology Forum, Fredericton, NB, Canada: Northeast Potato Technology Forum p.74-77, 2008.

t*Dickinson, P.S., *Stemmler, E.A., and *Christie, A.E. 2008. The pyloric neural circuit of the herbivorous crab Pugettia producta shows limited sensitivity to a number of neuromodulators that elicit robust effects in more opportunistically feeding decapods. J. Exp. Biol. 211:1434-47. PMID 18424677.

t*Dickinson, P.S., *Stemmler, E.A., ²Cashman, C.R., Brennan, H.R., ²Dennison, B., ²Huber, K.E., ²Peguero, B., Rabacal, W., Goiney, C.C., *Smith, C.M., *Towle, D.W., *Christie, A.E. 2008. SIFamide peptides in clawed lobsters and freshwater crayfish (Crustacea, Decapoda, Astacidea): a combined molecular, mass spectrometric and electrophysiological investigation. Gen Comp Endocrinol. 156:347-60.

*Dickinson, P.S., Stemmler, E.A., ²Cashman, C.R., Brennan, H.R., ²Dennison, B., ²Huber, K.E., ²Peguero, B., Rabacal, W., Goiney, C.C., *Smith, C.R., *Towle, D.W., and *Christie, A.E. 2008. SIFamide peptides in clawed lobsters and freshwater crayfish (Crustacea, Decapoda, Astacidea): a combined molecular, mass spectrometric and electrophysiological investigation. Gen. Comp. Endocrinol. 156:347-360. PMID 18308319.

²Foster, J.A., Broge, T.A., Atchley, D.S., and ¹Bavis, R.W. 2008. Hypercapnic ventilatory response of adult quail after chronic neonatal hypercapnia. FASEB Journal 22: 955.10. PMID not available.

*Hsu, Y.W., Stemmler, E.A., Messinger, D.I., *Dickinson, P.S., *Christie, A.E., and de la Iglesia, H.O. 2008. Cloning and differential expression of two beta-pigment-dispersing hormone (beta-PDH) isoforms in the crab Cancer productus: Evidence for authentic beta-PDH as a local neurotransmitter and beta-PDH II as a humoral factor. J. Comp. Neurol. 508:197-211. PMID 18311785. ^{Program Director/Principal Investigator (Last, First, Middle):} Hand, Patricia ^H.

Hsu, Y.W., Weller, J.R., “Christie, A.E., and de la Iglesia, H.O. 2008. Molecular cloning of four cDNAs encoding prepro-crustacean hyperglycemic hormone (CHH) from the eyestalk of the red rock crab Cancer productus: identification of two genetically encoded CHH isoforms and two putative post-translationally derived CHH variants. Gen. Comp. Endocrinol. 155:517-525. PMID 17961562.

t*Hwang, J.H., Parton, A., *Czechanski, A., Ballatori, N., and *Barnes, D. 2008. Arachidonic acid-induced expression of the organic solute and steroid transporter-beta (Ost-beta) in a cartilaginous fish cell line. Comparative Biochemistry and Physiology, Toxicolology and Pharmacology 148:39-47.

Ma, M., Chen, R., ²Sousa, G.L, Bors, E.K., Kwiatkowski, M., Goiney, C.C., Goy, M.F., *Christie, A.E., and Li, L. 2008. Mass spectral characterization of peptide transmitters/hormones in the nervous system and neuroendocrine organs of the American lobster Homarus americanus. Gen. Comp. Endocrinol. 156:395- 409. PMID 18304551.

t²Scannell, E., Quinlan, E., Dell’Ova, C. Murphy, A.D., and ¹Kleckner, N.W. 2008. Pharmacology of ionotropic and metabotropic glutamate receptors on neurons involved in feeding behavior in the pond snail, Helisoma trivolvis. J. Exp. Biol. 211:824-833. PMID 18281346.

Schmidt, J.J., Mcllwain, S., Page, D., *Christie, A.E., and Li, L. 2008. Combining MALDI-FTMS and bioinformatics for rapid peptidomic comparisons. J. Proteome Res. 7:887-896. PMID 18205299.

²Sousa, G.L., *Lenz, P.H., Hartline, O.K., and *Christie, A.E. 2008. Distribution of pigment dispersing hormone- and tachykinin-related peptides in the central nervous system of the copepod crustacean Calanus finmarchicus. Gen. Comp. Endocrinol. 156:454-459. PMID 18413275.

Staudigel, H., Fumes, H., McLoughlin, N., Banerjee, N.R., *Connell, L.B., and Templeton, A.S. 2008. 3.5 billion years of glass bioalteration: Volcanic rocks as a basis for microbial life? Earth-Sciences Reviews. 10.1016/j.earscirev.2008.04.005.

*Stone, J.L., and Jenkins, E.G. 2008. Pollinator abundance and pollen limitation of a Solanaceous shrub at premontane and lower montane sites. Biotropica 40: 55-61.

t*Thompson, R.R., “Dickinson, P.S., Rose, J.D., Dakin, K.A., Civiello, G.M., Segerdahl, A., and Bartlett, R. 2008. Pheromones enhance somatosensory processing in newt brains through a vasotocin-dependent mechanism. Proc. Roy. Soc. B. 275:1685-93. PMID 18445557.

t*Christie, A.E., ²Cashman, C.R., ²Stevens, J.S., *Smith, C.M., *Beale, K.M., Stemmler, E.A., Greenwood, S.J., *Towle, D.W., “Dickinson, P.S. 2008. Identification and cardiotropic actions of brain/gut-derived tachykinin-related peptides (TRPs) from the American lobster Homarus americanus. Peptides. In press.

tDoperalski, N.J., Sandhu, M.S., ¹Bavis, R.W., Reier, P.J., and Fuller, D.D. Sex differences in respiratory recovery following high cervical spinal hemisection in rats. Respir. Physiol. Neurobiol., In Press.

tHsu YW, Stemmler EA, Messinger Dl, “Dickinson PS, “Christie AE, de la Iglesia HO. (2008). Cloning and differential expression of two beta-pigment-dispersing hormone (beta-PDH) isoforms in the crab Cancer productus: Evidence for authentic beta-PDH as a local neurotransmitter and beta-PDH II as a humoral factor. J Comp Neurol. 508(2): 197-211.

tKilgore, D.L., Jr., Boggs, D.F., Kilgore, T.J., Colby, C., Williams, B.R., Jr., and ¹Bavis, R.W. Ventilatory and metabolic responses of burrowing owls, Athene cunicularia, to moderate and extreme hypoxia: analysis of the hypoxic ventilatory threshold vs. hemoglobin oxygen affinity relationship in birds. Comp. Physiol. Biochem. A, In Press,

t Kiyota, M, Insley, S.J., and “Lance, S.L. Effectiveness of territorial polygyny and alternative mating strategies in northern fur seals Callorhinus ursinus. Behavioral Ecology and Sociobiology, In Press.

tKobayashi, H., Parton, A., “Czechanski, A., and “Barnes, D. Multidrug resistance-associated protein 3 (Mrp3/Abcc3/Moat-D) is expressed in the SAE Squalus acanthias shark embryo-derived cell line. Zebrafish. In Press.

t*Lage, C.R., “Peterson, C.W., Forest, D., “Barnes, D.W., Kornfield, I., and “Wray, C.W. Evidence of multiple paternity in spiny dogfish (Squalus acanthias) broods based on microsatellite analysis. J. Fish Biology. In Press.

t*Palopoli, M.F., Rockman, M.V., ²TinMaung, A., ²Ramsay, C., ²Curwen, S., ²Aduna, A., ²Laurita, J., and Kruglyak, L. Molecular basis of the copulatory plug polymorphism in Caenorhabditis elegans. Nature. In Press.

fShaw, J.R., ¹Sato, D., VanderHeide, J., LaCasse, T., Stanton, C.R., Lankowski, A., Stanton, S.E., Chapline, C., Coutermarsh, B., Barnaby, R., Karlson, K., and *Stanton, B.A. The role of SGK and CFTR in acute adaptation to seawater in Fundulus heteroclitus. Cell Physiol Biochem. In Press.

fTomana, M., Parton, A., and *Barnes, D. Improved methods for separation from peripheral blood and flow cytometric analysis of leukocytes from the little skate (Leucoraja erinacea). Fish and Shellfish Immunology. In Press.

2008 Published Abstracts

t¹Planchart, A. and ¹Mattingly, C.J. 47^th Annual Society of Toxicology Meeting, Seattle WA, March 2008. Arsenic perturbation of gene networks during vertebrate development.

¹Mattingly, C.J. 47^th Annual Society of Toxicology Meeting, Seattle WA, March 2008. Using the Comparative Toxicogenomics Database to identify chemical-gene-disease associations: arsenic as a case study.

¹Mattingly, C.J. NERC International Collaboration Initiative: Bioinformatics Workshop, Birmingham, UK, March 2008. The Comparative Toxicogenomics Database (CTD): Promoting understanding of chemical-gene- disease associations.

t¹Bavis, R.W., and D.F. Donnelly*. 2008. Time-dependent alterations in peripheral chemoreceptor activity during postnatal hyperoxia. FASEB Journal, in press.

t²Cashman, G R.; *Dickinson, P.S.; *Christie, A.E.; Stemmler, E.A. The identification and comparative analysis of orcokinin family neuropeptides in crustaceans by MALDI-FTMS. 235th National Meeting of the American Chemical Society, New Orleans, LA, United States, April 6-10 (2008).

t*Dmitrieff, E.F., K.B. Dunmire*, S.E. Piro*, and R.W Bavis¹. 2008. Perinatal hyperoxia alters the expression of neurotrophic factors and their receptors in the rat carotid body. FASEB Journal, in press.

2008 Books And Book Chapters

t¹Congdon CB, “Phylogenetic inference Using Evolutionary Algorithms”, in Corne DW, Fogel GF, and Pan Y, editors, Computational Intelligence in Bioinformatics, Wiley. January 2008.

¹Sommer, Rebecca J. Toxicology, Vol. 7 of Comprehensive Toxicology Series, Eds. Walker M.K. and Campen M.J., Elsevier, In press.

2007

^t1Bavis, R.W., Powell, F.L., Bradford, A., Hsia, C.C.W., Peltonen, J.E., Soliz, J., Zeis, B., *Ferguson, E.K., Fu, Z., Gassmann, M., Kim, C.B., Maurer, J., McGuire, M., ²Miller, B.M., O’Halloran, K.D., Paul, R.J., Reid, S.G., Rusko, H.K., Tikkanen, H.O., and Wilkinson, K.A. 2007. Respiratory plasticity in response to changes in oxygen supply and demand. Integrative and Comparative Biology 47: 532-551.

Begum, S., Zhang, Y., Shintani, T., Toratani, S., Sato, J.D., and Okamoto, T. 2007. Immunohistochemical expression of HBp17/FGFBP-1, FGF-2 and VEGF-A in head and neck tumorigenesis. Oncol. Reports 17:591-596. PMID 17273738.

Burnett, K.G., Bain, L.J., Baldwin, W.S., Callard, G.V., Cohen, S., DiGiulio, R.T., Evans, D.H., Gomez-Chiarri, M., Hahn, M.E., Hoover, C.A., Karchner, S.I., Katoh, F., MacLatchy, D.L., Marshall, W.S., Meyer, J.N., Nacci, D.E., Oleksiak, M.F., Rees, B.B., Singer, T.D., Stegeman, J.J., *Towle, D.W., VanVeld, P.A., Vogelbein, W.K., Whitehead, A., Winn, R.N., and Crawford, D.L. 2007. Fundulus as the premier teleost model in environmental biology: Opportunities for new insights using genomics. Comp. Biochem. Physiol. D 2: 257-286. PMID 18071578.

t *Christie, A.E., ²Rus, S., Goiney, C.C., *Smith, C.M., Towle, D.W., and *Dickinson. P.S. 2007. Identification and characterization of a cDNA encoding a crustin-like, putative antibacterial protein from the American lobster Homarus americanus. Mol. Immunol. 44, 3333-3337. PMID 17418897.

*Christie, A.E., ²Sousa, G.L, ²Rus, S., *Smith, C.M., *Towle, D.W., Hartline, O.K., and *Dickinson, P.S. 2007. Identification of A-type allatostatins possessing -YXFGI/Vamide carboxy-termini from the nervous system ofthecopepod crustacean Calanus finmarchicus. Gen. Comp. Endocrinol. PMID 17950732.

*Coffman, J.A. and Denegre, J.M. 2007. Mitochondria, redox signaling, and axis specification in metazoan embryos. Dev. Biol. 308: 266-280. PMID 17586486.

t¹Congdon, C.B., *Gaskins, H.R., Nava, G.M., and ¹Mattingly, C. 2007. Towards interactive visualization for exploring conserved motifs in noncoding DNA sequence. Frontiers in the Convergence of Bioscience and Information Technologies (FBIT 2007), Jeju Island, Korea.

tDickinson, P.S., ²Stevens, J.S., ²Rus, S., ²Brennan, H.R., Goiney, C.C., *Smith, C.M., Li, L., Towle, D.W., and *Christie, A.E. 2007. Identification and cardiotropic actions of sulfakinin peptides in the American lobster Homarus americanus. J. Exp. Biol. 210, 2278-2289. PMID 17575033.

Doukeris, C.E. and ¹Planchart, A. 2007. Characterization of a novel DNA motif in the Tctexl and TcpIO gene complexes and its prevalence in the mouse genome. Adv. Biol. Res. 1:1-16.

tForest, D., Kobayashi, H., *Nishikawa, R., Parton, A., *Bayne, C.J., and *Barnes, D.W. 2007. RNA expression in a cartilaginous fish cell line reveals ancient 3′ noncoding regions highly conserved in vertebrates. Proc. Natl. Acad. Sci. U.S.A. 104:1224-1229.

t²Goth, T., Tsai, C-T., Chiang, F-T., and ¹Congdon, C.B. 2007. Initial results with EpiSwarm, a Swarm-based system for investigating genetic epistasis. Congress on Evolutionary Computation (CEC-2007), Singapore.

¹Graber, J.H., Salisbury, J., Hutchins, L.N., and Blumenthal, T. 2007. C. elegans sequences that control trans- splicing and operon pre-mRNA processing. RNA. 13:1409-26. PMID 17630324. ^{Program Director/Principal Investigator (Last, First, Middle):} Hand, Patricia ^H.

tHayashi, Y., Furue, M., Okamoto, T., Ohnuma, K., Myoishi, Y., Fukuhara, Y., Abe, T., ¹Sato, J.D., Hata, R., and Asashima, M. 2007. Integrins regulate mouse embryonic stem cell self-renewal. Stem Cells 25: 3005- 3015. PMID 17717067.

²Jayasundara, N., *Towle, D.W., Weihrauch, D., and Spanings-Pierrot, C. 2007. Gill-specific transcriptional regulation of Na⁺+K⁺-ATPase a-subunit mRNA in the euryhaline shore crab Pachygrapsus marmoratus’. Sequence variants and promoter structure. J. Exp. Biol. 210, 2070-2081. PMID 17562880.

fKobayashi, H., Parton, A., *Czechanski, A., ²Durkin, C., Kong, Y. K., and *Barnes, D. 2007. Multidrug resistance-associated protein 3 (Mrp3/Abcc3/Moat-D) is expressed in the SAE Squalus acanthias shark embryo-derived cell line. Zebrafish, 4: 261-275.

*Liu, D., Brockman, J.M., Dass, B., Hutchins, L.N., Singh, P., McCarrey, J.R., MacDonald, C.C., and ¹Graber, J.H. 2007. Systematic variation in mRNA 3′-processing signals during mouse spermatogenesis. Nuc. Acids Res. 35(1):234-246. PMID 17158511.

t²Maynard, K.M., McCarthy, S.S., ²Sheldon, E., and ¹Horch, H.W. 2007. Developmental and adult expression of sempahorin 2a in the cricket Gryllus bimaculatus. Journal of Comparative Neurology. 503: 169-181. PMID 17480023.

fMcBride, A.E., Zurita-Lopez, C., ²Regis, A., Blum, E., Conboy, A., Elf, S., and Clarke, S. 2007. Protein arginine methylation in Candida albicans: Role in nuclear transport. Eukaryot. Cell. Jul;6(7):1119-29. PMID 17483287.

tParton, A., Forest, D., Kobayashi, H., Dowell, L., Bayne, C., and *Barnes, D. 2007. Cell and molecular biology of SAE, a cell line from the spiny dogfish shark, Squalus acanthias. Comp. Biochem. Physiol. C 145: 111- 119. PMID 16949345.

tRomano, K.P., ²Newman, A.G., *Zahran, R.W., and *Millard, J.T. 2007. DNA Interstrand Cross-Linking by Epichlorohydrin. Chemical Research in Toxicology 20; 832-838. PMID 17441735.

t¹Sato, J.D., Chapline, M.C., Thibodeau, R., *Frizzell, R.A., and *Stanton, B.A. 2007. Regulation of human cystic fibrosis transmembrane conductance regulator (CFTR) by serum- and glucocorticoid-inducible kinase (SGK1). Cell. Physiol. Biochem. 20: 91-98. PMID 17595519.

Serrano, L., *Towle, D.W., Charmantier, G., and Spanings-Pierrot, C. 2007. Expression of Na⁺/K⁺-ATPase a- subunit mRNA during embryonic development of the crayfish Astacus leptodactylus. Comp. Biochem. Physiol. D 2, 126-134.

fShaw, J.R., Gabor, K., Hand, E., Lankowsky, A., Durant, L, Thibodeau, R., Stanton, C.R., Barnaby, R., Coutermarsh, B., Karlson, K., ¹Sato, J.D., Hamilton, J.W., and *Stanton, B.A. 2007. Role of the glucocorticoid receptor and environmental arsenic in acclimation to seawater in killifish (Fundulus heteroclitus). AJP: Reg. Int. Comp. Physiol. 292: R1052-1060. PMID 17038445.

Steffel, L.R., Cashman, T.J., Reutershan, M.H., and Linton, B.R. 2007. Deuterium exchange as an indicator of hydrogen bond donors and acceptors. Journal of the American Chemical Society 129:12956. PMID 17915878.

tStemmler, E.A., ²Bruns, E.A., ²Gardner, N.P., *Dickinson, P.S., and “Christie, A.E. 2007. Mass spectrometric identification of pEGFYSQRYamide: a crustacean peptide hormone possessing a vertebrate neuropeptide Y (NPY)-like carboxy-terminus. Gen. Comp. Endocrinol. May;152(1):1-7. PMID 17420018.

tStemmler, E.A., ²Peguero, B., ²Bruns, E.A., *Dickinson, P.S., and *Christie, A.E. 2007. Identification, physiological actions, and distribution of TPSGFLGMRamide: a novel tachykinin-related peptide from the midgut and stomatogastric nervous system of Cancer crabs. J. Neurochem. Jun;101 (5):1351-66, PMID 17437551.

tStemmler, E.A., Hsu, Y.W., ²Cashman, C.R., Messinger, D.I., de la Iglesia, H.O., *Dickinson, P.S., and *Christie, A.E. 2007. Direct tissue MALDI-FTMS profiling of individual Cancer productus sinus glands reveals that one of three distinct combinations of crustacean hyperglycemic hormone precursor-related peptide (CPRP) isoforms are present in individual crabs. Gen. Comp. Endocrinol. Oct-Dec;154(1-3):184- 92. PMID 17698069.

tStemmler, E.A., ²Cashman, C.R., Messinger, D.I., ²Gardner, N.P., *Dickinson, P.S., and *Christie, A.E. 2007. High-mass-resolution direct-tissue MALDI-FTMS reveals broad conservation of three neuropeptides (APSGFLGMRaniide, GYRKPPFNGSIFamide and pQDLDHVFLRFamide) across members of seven decapod crustaean infraorders. Peptides. Nov;28(11):2104-15. PMID 17928104. ^{Program Director/Principal Investigator (Last, First, Middle):} Hand, Patricia ^H.

t¹Theodosiou, N.A., ²Hall, D.A., and *Jowdry, A.L. 2007. Comparison of acid mucin goblet cell distribution and Hoxd13 expression patterns in the developing vertebrate digestive tract. Journal of Experimental Zoology (Mol Dev Evol) 308B: 442-453. PMID 17538949.

t*Towle, D.W. and Smith*, C.M. 2007. Gene discovery in Carcinus maenas and Homarus americanus via expressed sequence tags. Integrative and Comparative Biology, 46:6, 912-918.

²Zalinger, Z.A., *Bevier, C.R., and *Fekete, FA 2007. Antimicrobial properties of two purified skin peptides from the mink frog (Rana septentrionalis) against bacteria isolated from the natural habitat. Comparative Biochemistry and Physiology; Part C: Toxicology and Pharmacology, 146:325. PMID 17499556.

2007 Published Abstracts

1¹Bavis, R.W., *Fergusson, E.K., ²Piro, S.E. and ²Dunmire, K.B. 2007. Hyperoxia-induced inhibition of carotid body growth in rats: potential role for neurotrophic factors? IDeA States Northeast Region Meeting, Burlington, VT.

t²Cashman, C. R., Stemmler, E. A., *Dickinson, P. S. 2007. The Identification and Comparative Analysis of Orcokinin Family Neuropeptides in Crustaceans Using Matrix Assisted Laser Desorption/lonization-Fourier Transform Mass Spectrometry. 9^th Annual Beckman Scholars Symposium, Irvine, Ca.

t²Cashman, C.R., *Dickinson, P.S., *Christie, A.E., Stemmler, E.A. 2007. C-terminal histidine loss from orcokinin family neuropeptides: Implications for the identification of truncated neuropeptide variants by MALDI-FTMS. 233^rd National Meeting of the American Chemical Society, Chicago, IL.

t²Cashman, C.R., Hsu, Y.W.A., Messinger, D.I., *Christie, A.E., *Dickinson, P.S., De La Iglesia, H., Stemmler, E.A. 2007. Identification of individual-specific variations in peptide complement of crustacean neural tissues using direct tissue MALDI-FTMS. Society for Neuroscience Abstracts, # 140.4.

t¹Congdon CB, ²Aman J., ²Leighton B. and ¹Mattingly C., 2007. “A Genetic Algorithm Approach to Regulatory Motif Discovery”, IDeA States Northeast Region Meeting, Burlington, VT.

t*Dickinson, P.S., ²Stevens, J.S., Polistena, C., Bors, E., *Christie, A.E. 2007. Peptides with similar C- terminal endings (M/LRFamide) have different effects on pattern generators in the American lobster, Homarus americanus. Society for Neuroscience Abstracts, # 288.11. ^{Program Director/Principal Investigator (Last, First, Middle):} Hand, Patricia ^H.

t¹Hannum, Lynn G. and ²Kaplan, Jessica E. 2007. Cyclic patterns of respiratory burst activity in zebrafish (Dan/o rend). 2007 The Journal of Immunology 178: 90.12.

f¹Horch, H. W., Harris, J., ²Brosnan, J., and McCarthy, S. 2007. Differential gene regulation after auditory interneuron denervation in the cricket Gryllus bimaculatus. Abstracts of the Society for Neuroscience. 239.13.

²Marya, N., ²Sousa, G., and ¹Kleckner, N.W. 2007. Characterization and Mapping of Glutamate Receptor- Containing Neurons in Helisoma trivolvis. Soc. Neurosci. Abstr. online, 140.3.

t¹Mattingly C, *Aman, J., ²Denby, A., ¹Congdon, C.B. 2007. Identification of Conserved Non-coding Regions in the ATP Binding Cassette Family of Genes. National IDeA Symposium of Biomedical Research Excellence (NISBRE).

*Minot S, ²Bridger H, Caldwell A, and *Palopoli MF. 2007. Molecular population genetics of human follicle mites: Sequencing the mitochondrial genome of Demodex folliculorum. Annual Meeting of the New England Molecular Evolutionary Biologists. Queens College, CUNY.

t²Mitterling, KL, Law, LM., Gardner, RD., *Ramus, SJ., Lee, DW. 2007. Hippocampus and septum volumes show season, sex, and species differences in Black-capped Chickadees and Dark-eyed Juncos. Abstracts of the Society for Neuroscience. 751.11.

*Palopoli, MF., Rockman, MV., TinMaung A., ²Ramsay CH., Curwen SJ., Laurita JT. and Krugylak, L. 2007. Polymorphism at the Caenorhabditis elegans plg-1 locus is due to a recent retrotransposon insertion that blocks transcription of a mucin-like protein. International C. elegans Meeting, UCLA.

¹Planchart, A. Calhoun, J., Frels, W. and Wolf, A. 2007. An undefined intronic promoter element drives expression of a truncated isoform of Synj2, ASBMB Annual Meeting.

t²Rus, S., ²Sousa, G.L., *Smith, C.M., *Towle, D.W., Hartline, O.K., ‘Dickinson, P.S., *Christie, A.E. 2007. A- type allatostatins from the CNS of the copepod crustacean Calanus finmarchicus. Society for Neuroscience Abstracts, # 140.10.

²Scannell, E. and ¹Kleckner N.W. 2007. Pharmacological characterization of excitatory and inhibitory glutamate receptors in buccal neurons B5, B19, and B27 from Helisoma trivolvis. Soc. Neurosci. Abstr.online, 140.2.

tStemmler, E.A., ²Cashman, C.R., *Dickinson, P.S. 2007. “C-Terminal Fragmentation of Singly-Protonated, Arginine-Containing Peptides: Metastable Loss of C-Terminal Histidine, Lysine, and Arginine Characterized by MALDI-FTMS”, 55th ASMS Conference on Mass Spectrometry, Indianapolis, Indiana.

2006

f*Barnes, D., Dowell, L., Forest, D., Parton, A., and Kazianis, S. 2006. Characterization of XM, a novel Xiphophorous melanoma-derived cell line. Zebrafish 3:371-381. ^{Program Director/Principal Investigator (Last, First, Middle):} Hand, Patricia ^H.

Byrum, C.A., Walton, K., Robertson, A.J., ²Carbonneau, S., Thomason, R., Bradham, C.A., *Coffman, J.A., and McClay, D.R. 2006. Protein tyrosine and ser-thr phosphatases in the sea urchin, Strongylocentrotus purpuratus: identification and potential functions. Dev. Biol. 300:194-218. PMID 17087928.

t*Christie, A.E., Kutz-Naber, K.K., Stemmler, E.A., Klein, A., Messinger, D.I., Goiney, C.C., Conterato, A.J., ²Bruns, E.A., Hsu, Y-W.A., Li, L, and *Dickinson, P.S. 2006. Midgut epithelial endocrine cells are a rich source of the neuropeptides APSGFLGMRamide (Cancer borealis tachykinin-related peptide la) and GYRKPPFNGSIFamide (Gly1-SIFamide) in the crabs Cancer borealis, Cancer magister and Cancer productus. Journal of Experimental Biology, 210:699-714. PMID 17267655.

t*Christie, A.E., Stemmler, E.A., ²Peguero, B., Messinger, D.I., Provencher, H.L., ²Scheerlinck, P., Hsu, Y.- W.A., Guiney, M., de la Iglesia, H., and *Dickinson, P.S. 2006. Identification, Physiological Actions and Distribution of VYRKPPFNGSIFamide (Val¹-SIFamide) in the Stomatogastric Nervous System of the American Lobster Homarus americanus. J. Comp. Neurol. 49:406-21. PMID 16566002.

t Coblentz, F.E., *Towle, D.W., and Shafer, T.H. 2006. Expressed sequence tags from normalized cDNA libraries prepared from gill and hypodermal tissues of the blue crab, Callinectes sapidus. Comp. Biochemistry and Physiology, Part 1 200-208.

tEvsikov, A.V., ¹Graber, J.H., Brockman, J.M., Hampl, A., Holbrook, A.E., Singh, P., Eppig, J.J., Solter, D., and *Knowles, B.B. 2006. Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully-grown oocyte to embryo. Genes Dev. 20:2713-2727. PMID 17015433.

Genovese, G., ²Senek, M., Ortiz, N., Regueira, M., *Towle, D.W., Tresguerres, M., and Luquet, C.M. 2006. Dopaminergic regulation of ion transport in gills of the euryhaline semiterrestrial crab Chasmagnathus granulatus: interaction between D1- and D2-like receptors. J. Exp. Biol. Jul;209(Pt 14):2785-93. PMID: 16809469.

t¹Graber, J.H., “Churchill, G.A., Dipetrillo, K.J., King, B.L, Petkov, P.M., and *Paigen, K. 2006. Patterns and mechanisms of genome organization in the mouse. J. Exp. Zoolog. 305A(9):683-688. PMID 16902958.

Henry, R.P., Thomason, K.L., and *Towle, D.W. 2006. Quantitative changes in branchial carbonic anhydrase activity and expression in the euryhaline green crab, Carcinus maenas, in response to low salinity exposure. J. Exp. Zoolog. A Comp. Exp. Biol. Oct 1;305(10):842-50. PMID: 16736501.

*Kohorn, B.D., Kobayashi, M, Johansen, S., Perry-Freidman, H., Fischer, A, and Byers, N. 2006. Wall associated kinase 1 Is crosslinked in endomembranes and transport to the cell surface requires correct cell wall synthesis. Journal Cell Science 119:2282-90. PMID 16723734.

*Kohorn, B.D., Kobayashi, M., Johansen, S., Riese, J., Huang, L-F., Koch, K., Dotson, A., and Byers, N. 2006. An arabidopsis cell wall associated kinase required for invertase activity and cell growth. The Plant Journal, 46:307-16. PMID 16623892.

Linton, S.M., Greenaway, P., and *Towle, D.W. 2006. Endogenous production of endo-beta-1,4-glucanase by decapod crustaceans. J. Comp. Physiol. [B]. May; 176(4):339-48. PMID: 16408228.

*Liu, D., ¹Graber, J.H. 2006. Quantitative comparison of EST libraries requires compensation for systematic biases in cDNA generation. BMC Bioinformatics 7(1):77. PMID 16503995.

Lovett, D.L, Colella, T., Cannon, A.C., Lee, D.H., Evangelisto, A., Muller, E.M., and *Towle, D.W. 2006. Effect of salinity on osmoregulatory patch epithelia in gills of the blue crab Callinectes sapidus. Biol Bull. Apr;210(2): 132-9. PMID: 16641518.

Lovett, D.L., Verzi, M.P., Burgents, J.E., Tanner, C.A., Glomski, K., Lee, J.J., and *Towle, D.W. 2006. Expression profiles of Na⁺,K⁺-ATPase during acute and chronic hypo-osmotic stress in the blue crab Callinectes sapidus. Biol Bull. Aug;211(1):58-65. PMID: 16946242.

t¹*Mattingly, C.J., Colby, G.T., Rosenstein, M.C., *Forrest, J.N., and *Boyer, J.L. 2006. The Comparative Toxicogenomics Database (CTD): a resource for comparative toxicological studies. J. Exp. Zoolog. A Comp. Exp. Biol. 305(9):689-92. PMID 16902965.

t¹Mattingly, C.J., Rosenstein, M.C., Davis, A.P., Colby, G.T., *Forrest, J.N., and *Boyer, J.L. 2006. The Comparative Toxicogenomics Database (CTD): a cross-species resource for building chemical-gene interaction networks. Toxicol. Sci.. 92(2):587-95. PMID 16675512.

McBride, A.E., ²Cook, J.T., Stemmler, E.A., Rutledge, K.L., ²McGrath, K.A, and²Rubens, J.A. 2006. Arginine methylation of yeast mRNA-binding protein Npl3 directly affects its function, nuclear export, and intranuclear protein interactions. J. Biol. Chem. 280:30888-98. PMID 15998636. ^{Program Director/Principal Investigator (Last, First, Middle):} Hand, Patricia ^H.

t*Millard, J.T., ²Hanly, T.C., Murphy, K., and Tretyakova, N. 2006. The 5′-GNC site for DNA interstrand cross- linking is conserved for diepoxybutane stereoisomers. Chemical Research in Toxicology 19:16-19. PMID 16411651.

Salisbury, J, *Hutchison, K.W., and ¹Graber, J.H. 2006. A multispecies comparison of the metazoan 3′- processing downstream elements and the CstF-64 RNA recognition motif. BMC Genomics 7(1):55. PMID 16542450.

tSchlax, P.E., Zhang, J., Lewis, E., ¹Planchart, A., and *Lawson, T.G. 2006. Degradation of the encephalomyocarditis virus and hepatitis A virus 3C proteases by the ubiquitin/26S proteasome system in vivo. Virology. E-pub ahead of print. PMID 17150238.

tStemmler, E.A., ²Gardner, N.P., Guiney, M.E., ²Bruns, E.A., and *Dickinson, P.S. 2006. The detection of red pigment concentrating hormone (RPCH) in crustacean eyestalk tissues using Matrix Assisted Laser Desorrption/lonization-Fourier Transform Mass Spectrometry: [M⁺Na] ion formation in dried droplet tissue preparations. J. Mass Spectrometry, 41:295-311. PMID 16421875.

¹Theodosiou, N.A. 2006. Review of The Atlas of Chick Development, Second Edition by Ruth Bellairs and Mark Osmond. In Vitro Cell. Dev. Biol.-Animal Sept/Oct 42(8):281.

2006 Published Abstracts

¹Bavis, Ryan W. 2006. Hypoxia, hyperoxia and the development of the hypoxic ventilatory response. Program for First International Congress of Respiratory Biology, Bonn, Germany, p. 59.

t²Brennan, H.R., Goiney, C.C., ²Kotecha, V.R., Hsu, Y.A., *Smith, C.M., *Towle, D.W., ‘Christie, A.E *Dickinson, P.S. 2006. Identification of prepro-sulfakinin in the American lobster Homarus americanus, Society for Neuroscience Abstracts, # 129.5.

t²Cashman, C.R., Stemmler, E.A., ²Horvath, N.A., ²Rus, S., Goiney, C.C., Messinger, D.I., Hsu, Y.A., ²Brennan, H.R., *Christie, A.E., *Dickinson, P.S. 2006. Diversity of orcokinin family peptides among the ^{Program Director/Principal Investigator (Last, First, Middle):} Hand, Patricia ^H.decapod crustaceans: sequences and distributions across infraorders. Society for Neuroscience Abstracts, #129.11.

tEaston, C.R., Goiney, C.C., Thouvenel, C.D., *Dickinson, P.S., Christie, *A.E. 2006. SIFamide-like immunoreactivity in the central nervous system of the isopod Ligia pallasii is more similar in organization to that of dipteran insects than it is to that of decapod crustaceans. Society for Neuroscience Abstracts, # 129.7.

tGoiney, C.C., ²Brennan, H.R., ²Cashman, C., ²Peguero, B., Rabacal, W., Messinger, D.I., Easton, C.R., Hsu, Y.A., *Smith, C.M., *Towle, D.T., Stemmler, E.A., *Dickinson, P.S., *Christie, A.E. 2006. YRKPPFNGSIFamide is a genus (/-/omart;s)-specific isoform within the SIFamide peptide family. Society for Neuroscience Abstracts, #129.9.

f¹Horch, Hadley W. 2006. Investigation of dendritic tiling and arbor size after compensatory regeneration in cricket auditory interneurons. Society for Neuroscience Abstracts, Atlanta, GA.

fHsu, Y. A., *Christie, A.E., *Dickinson, P.S., McNabb, S.L. 2006. Development and metamorphic remodeling of SIFamide-immunopositive neurons in Drosophila melanogaster. Society for Neuroscience Abstracts, #129.10.

²Jayasundara, N., Spanings-Pierrot, C., and *Towle, D.W. 2006. “Salinity-Induced Changes in Isoform- Specific NaK-ATPase Gene Expression in the European Shore Crab Pachygrapsus marmoratus” Society for Integrative and Comparative Biology Symposium, Orlando, FL.

t²Lake, Benjamin E., Johnson, Amy S. and Mauck, Robert A. 2006. Influence of orientation and water current speed on feeding behavior and metabolism of Semibalanus balanoides. Integr. Comp. Biol. 46(e): 219; doi:10.1093/icb/ic!056

t¹Mattingly, C.J., Colby, G.T., Rosenstein, M.C., *Forrest, J.N., *Boyer, J.L. 2006. “CTD: The Comparative Toxicogenomics Database” Society of Toxicology Annual Meeting, San Diego, CA.

t²Maynard, Kristen R., ²Sheldon, E., McCarthy, S. and ¹Horch, H.W. 2006. Developmental and adult expression of semaphorin in the cricket, Gryllus bimaculatus. Society for Neuroscience, Atlanta, GA.

t²Pariseau, J.P., De Camilli, P. and ²Morgan, J.R. 2006. The recruitment of dynamin to endocytic zones of lamprey reticulospinal synapses requires the presence of the actin cytoskeleton. Society for Neuroscience Abstracts, 339.8.

t²Peguero, B., Pott, M., Rabacal, W., and *Dickinson, P.S. 2006. “SIFamide activation in the stomatogastric nervous system of decapod crustaceans” Biological Sciences Curriculum Study Symposium, Boston, MA.

t²Peguero, B., ²Bruns, E.A., Rabacal, W., Messinger, D.I., *Christie, A.E., *Dickinson, P.S. and Stemmler, E.A. 2006. Identification of a novel tachykinin-related peptide from the midgut and stomatogastric nervous system of Cancer crabs. Society for Neuroscience Abstracts, # 129.3.

t*Towle, D.W. 2006. “Functional Genomics of Environmental Adaptations in Marine Crustaceans” Society for Integrative and Comparative Biology Symposium, Orlando, FL.

2005

t*Barnes D.W., ¹Mattingly C., Parton, A., Dowell, L.M., *Bayne, C.J., and *Forrest, J.N. 2005. Marine organism regulatory sequence modeling in comparative functional genomics and predictive cell biology. Cytotechnology 43:123-137.

*Brockman, J.M., Singh, P., Liu, D. Quinlan, S., Salisbury, J., and ¹Graber, J.H. 2005. Pacdb: an annotated, curated database of 3′-processing sites. Bioinformatics 15;21(18):3691-3. PMID 16030070.

Choe, K.P., Kato, A., Hirose, S., Plata, C., Cindic, A., Romero, M.F., *Claiborne, J.B., and Evans, D.H. 2005. NHE3 in an ancestral vertebrate: primary sequence, distribution, localization, and function in gills. Am. J. Physiol. Regul. Integr. Comp. Physiol. 289:1520-1534. PMID 15994375.

t¹Congdon, C.B., Fizer, C.W., Smith, N.W., Gaskins, H.R., ²Aman, J., Nava, G., and ¹Mattingly C.M. 2005. Preliminary Results for GAMI: A Genetic Algorithms Approach to Motif Inference. Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, La Jolla, California.

*Edwards, S.L., Wall, B.P., Morrison-Shetlar, A., Sligh, S., Weakley, J.C., and *Claiborne, J.B. 2005. The effect of environmental hypercapnia and salinity on the expression of NHE-like isoforms in the gills of a euryhaline fish (Fundulus heteroclitus). J. Exp. Zool. 303: 464-475. PMID 15880778.

Furue, M., Okamoto, T., Hayashi, Y., Ohkochi, H., Fujimoto, M., Abe, H., Ohnuma, K., Sato, G.H., Asashima, M., and ¹Sato, J.D. 2005. LIF as an anti-apoptotic mitogen for pluripotent mouse ES cells in a serum-free medium without feeder cells. In Vitro Cell. Devel. Biol. 41:19-28.

McBride A.E., Cook J.T., *Stemmler E.A., Rutledge K.L., ²McGrath K.A., and Rubens, J. A. 2005. Arginine methylation of yeast mRNA-binding protein Npl3 directly affects its function, nuclear export, and intranuclear protein interactions. J. Biol. Chem. 280:30888-98. PMID 15998636.

Pelis, R.M., Edwards, S.L., Kunigelis, S.C., *Claiborne, J.B., and Renfro, J.L 2005. Stimulation of renal sulfate secretion by metabolic acidosis requires Na+/H+ exchange induction and carbonic anhydrase. Am. J. Physiol. Renal Physiol. 289:F208-F216. PMID 15741604.

fPetkov, P.M., ¹Graber, J.H., Churchill, G.A., King, B.L., DiPetrillo, K.J., and Paigen, K. 2005. Evidence of a large-scale functional organization of mammalian chromosomes. PLoS Genet. 1(3):e33. PMID 16163395.

tSchimenti, J.C., Reynolds, J.L. and ¹Planchart, A. 2005. Mutations in Serad or Synj2 cause proximal t haplotype-mediated male mouse sterility but not transmission ratio distortion. Proc. Natl. Acad. Sci. U.S.A. Mar1;102(9):3342-7. PMID 15722415.

t¹Sommer, R.J., Hume, A.J., Ciak, J.M., VanNostrand, J.J., Friggens, M., and Walker, M.K. 2005. Early developmental 2,3,7,8-tetrachlorodibenzo-p-dioxin exposure decreases chick embryo heart chronotropic response to isoproterenol but not to agents affecting signals downstream of the beta-adrenergic receptor. Toxicol. Sci. 83:363-371. PMID 15564318.

t¹Theodosiou, N.A, Tabin, C.J. 2005. Sox9 and Nkx2.5 determine the pyloric sphincter epithelium under the control of BMP signalling. Developmental Biology 279(2):481-490. PMID 157336673.

Weihrauch, D., Kanchanapoo, J., Ao, M., Piyachaturawat, P., and Rao, M.C. 2005. Weanling, but not adult, rabbit colon absorbs bile acids: Flux linked to expression of putative bile acid transporters. AJP Gl and Liver Physiology. PMID 16166347.

Zhang, Y., Hiraishi, Y., Wang, H., Sumi, K., Hayashido, Y., Toratani, S., Kan, M., ¹Sato, J.D. and Okamoto, T. 2005. Constitutive activating mutation of the FGFRSb in oral squamous cell carcinomas. Int. J. Cancer 117: 166-168. PMID 15880580.

2005 Published Abstracts

t*Dickinson, P.S., Messinger, D.I., Schmidt, J.J., Hsu, Y.A., *Rabacal, W. ²Ho, T.N., *Pott, M., ²Peguero, B., Stemmler, E.A., Li., L., and Christie, A.E. 2005. Sifamides in Stomatogastric Nervous System and Neuroendocrine Organs of Decapod Crustaceans. Society for Neuroscience, Washington, DC.

t²Gerhold, K., *Knox, A.S., and ¹Kleckner, N.W. 2005. Cloning and localization of excitatory glutamate receptors from the central nervous system of Helisoma trivolvis. Soc. Neurosci. Abstr, #486.12, Washington, DC.

Kraichak, E., and *Palopoli, M.F. 2005. “Evolution of increased sperm size under conditions of increased sperm competition in the nematode Caenorhabditis elegans” 16th Annual New England Molecular Evolutionary Biologists Meeting, Wellesley MA.

t²Peguero, B., ²Scheerlinck, P., Stemmler, E.A., Provencher, H.L., Guiney, M.E., Messinger, D.I., Soon, P.Y., Hsu, Y.A., de la Ingelsia, H.O.,²Coito, M., Christie, A.E., and *Dickinson, P.S. 2005. “The Peptide Val1- Sifamide activates multiple patterns in the lobster nervous system.” Society for Neuroscience, Washington, DC.

¹Mattingly, C.J., Colby. G.T., Rosenstein, M.C., *Forrest, J.N., *Boyer, J.L. 2005. The Comparative Toxicogenomics Database (CTD). Society of Toxicology Annual Meeting.

t¹Planchart, A. 2005. A potential regulatory factor binding site found at the crossroad of bioinformatics and molecular biology. UT/ORNL/KBRIN Bioinformatics Summit.

t²Rafferty, J.R., and ¹Kleckner, N.W. 2005. “Glutamate signal transduction pathways causing inhibition in buccal neurons of Helisoma trivolvis” Society of Neuroscience Meeting, Washington, DC.

²Segerdahl, A., ²Bartlett, R., *Dickinson, P., Moore, F., and Thompson, R. 2005. “Female sex pheromones enhance somatosensory responsiveness in male roughskin newts by inducing local vasotocin release” Society for Neuroscience, Program No. 78.5. Abstract Viewer/Itinerary Planner. Washington, DC.

2025 Books And Book Chapters

t*Barnes, D., Collodi, P., 2005, Fish Cell Lines and Stem Cells in The Physiology of Fishes, 3rd edition, Evans, D., Claiborne, J.B., eds, CRC Press, pp.553-575

2004

Altmann SM, Mellon MT, Johnson MC, Paw BH, Trede NS, Zon LI, *Kim CH. Cloning and characterization of an Mx gene and its corresponding promoter from the zebrafish, Danio rerio. Dev Comp Immunol. 2004 Apr;28(4):295-306. 

Condliffe SB, Zhang H, *Frizzell RA. Syntaxin 1A regulates ENaC channel activity. J Biol Chem. 2004 Mar 12;279(11):10085-92. Epub 2003 Dec 31.

Haggie PM, *Stanton BA, Verkman AS. Increased diffusional mobility of CFTR at the plasma membrane after deletion of its C-terminal PDZ binding motif.  J Biol Chem. 2004 Feb 13;279(7):5494-500. Epub 2003 Dec 01.

t¹Mattingly, C., Parton, A., Dowell, L., ²Rafferty, J., and *Barnes, D. 2004. Cell and Molecular Biology of Marine Elasmobranchs: Squalus acanthias and Raja erinacea. Zebrafish 1:111-120.

O’Brien TP, *Frankel WN. Moving forward with chemical mutagenesis in the mouse. J Physiol. 2004 Jan 1;554(Pt 1):13-21. Review.

fPeaston, A.E., Evsikov, A.V., ¹Graber, J.H., de Vries, W.N., Holbrook, A.E., Solter, D., and *Knowles, B.B. 2004. Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos. Dev Cell. Oct;7(4):597-606. PMID 15469847.

^*Antonio Planchart¹ and Kathryn S. Whorf² Synj2^Sac1: a novel, membrane-associated isoform of the Synj2 phosphatidylinositol polyphosphate 5-phosphatase in mouse brain and testis. June 2004 ASBMB Annual Meeting and 8^th IUBMB Conference, Boston, MA

¹Sommer, R.J. A successful AREA grant proposal in the biological sciences. 2004. Council on Undergraduate Research Quarterly, 24(3), 125-128.

*Voznesensky, M., *Lenz, P.H., Spanings-Pierrot, C., and *Towle, D.W. 2004. Genomic approaches to detecting thermal stress in Calanus finmarchicus (Copepoda: Calanoida). Journal of Experimental Marine Biology and Ecology. [V. 311, 37-47].

Weihrauch, D., McNamara, J.C., *Towle, D.W. and Onken, H. 2004. Ion-motive ATPases and active, transbranchial NaCL uptake in the red freshwater crab, Dilocarcinus page/ (Decapoda, Trichodactylidae). J. Exp. Biol. 207:4623-4631. PMID 15579558. ^{Program Director/Principal Investigator (Last, First, Middle):} Hand, Patricia ^H.

Weihrauch, D., Morris, S., and *Towle, D.W. 2004. Ammonia excretion in aquatic and terrestrial crabs. J. Exp. Biol. 207:4491-4504. PMID 15579545.

Ziegler, A., Weihrauch, D., Hagedorn, M., *Towle, D.W., and Bleher, R. 2004. Expression and polarity reversal of V-type H+-ATPase during the mineralization-demineralization cycle in Porcellio scaber sternal epithelial cells. J. Exp. Biol. 207:1749-1756. PMID 15073207.

2003

Henry, R.P., S. Gehnrich, D. Weihrauch, and *D.W. Towle.  2003.  Salinity-mediated carbonic anhydrase induction in the gills of the euryhaline green crab, Carcinus maenas.  Comp. Biochem. Physiol. A 136: 243-258.

Mehalow AK, Kameya S, Smith RS, Hawes NL, Denegre JM, Young JA, Bechtold L, Haider NB, Tepass U, Heckenlively JR, Chang B, Naggert JK, *Nishina PM. CRB1 is essential for external limiting membrane integrity and photoreceptor morphogenesis in the mammalian retina. Hum Mol Genet. 2003 Sep 1;12(17):2179-89. Epub 2003 Jul 15.

†Yasuto Fukui, Miho Furue, Yasufumi Myoishi, *J. Denry Sato, Tetsuji Okamoto and Makoto Asashima.  Long-term culture of Xenopus presumptive ectoderm in a nutruent-supplemented culture medium.  Develop. Growth Differ (2003) 45, 499-506.

†*Towle, D.W., *P.H. Hand, *B. Kent, M.P. *McKernan, and *T.G. Lawson.  An intensive short course in molecular biology for undergraduates.  Council on Undergraduate Research Quarterly.  Dec. 2003, 79-84.

*Towle, D.W., and R.P. Henry.  2003.  Coping with environmental change: Physiological challenges.  In: The American Horseshoe Crab Limulus polyphemus.  C.N. Shuster, Jr., ed.  Harvard University Press.

*Tilden AR, Brauch R, Ball R, Janze AM, Ghaffari AH, Sweeney CT, Yurek JC, Cooper RL. Modulatory effects of melatonin on behavior, hemolymph metabolites, and neurotransmitter release in crayfish. Brain Res. 2003 Dec 5;992(2):252-62.

†Toumadje A, Kusumoto KI, Parton A, Mericko P, Dowell L, Ma G, Chen L, *Barnes D, *Sato JD. Pluripotent Differentiation in vitro of Murine ES-D3 Embryonic Stem Cells. In Vitro Cell Dev Biol Anim. 2003 Sep [EPub ahead of print]

key: † acknowledges BRIN support